RNA id: TCONS_00003065


Basic Information

Item Value
RNA id TCONS_00003065
length 7421
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_000262
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21331425 ~ 21341653 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTCTCAGTCTctgtttatttcaaaatattccaaaaaataaagcaatcgGTCCACATTCCATTTAGAAAAATGTCCTCCTTTTTTTTCATCCCATGGCAAACCCTCCAGCTGAAATGATGCTAGTGATGACCAGTCCATTAGTGTCTGGAAATGAGAGACAGCTTGGTACTTCACTCAGACGTTCCCAAACATTCTCccaaaaaaagcacaaaatgagCAATCCTCTAATGTGCGTCTTTGTGTAATCGTGTATCATCCAAGATTTTAAGTTATACACATGAATGGATTCTATTTACATGTAcagtacatatacatataaaactaATGAACAAGATTTCAGTTACACAGCATGGCATAGAAAAGGGTGATCGGCTTATACTTTATCAATATAATTTTCAATATAACTATCTGTAATAATCATCTCCATCTCTTAGTCTTCAGGTCATGACTACGTCAAAGAAAACCCCTACTTAACTAATATAAGTGATATACATAATCATCgcttttataaaaacaaacataactaAAGGTCGTCATGCTTTTCACAGTTAAAACTGCATATCGTAGTGCACCTTATTAAAAGTACAATGCATTTAATATGAaaacctaaacaaaacaaaacatagagAGCCAAAGATGACATAAATAACAAACCCTCGAGTATAGGGTGCTAATTTTCAGTCTTTACATTTCCCCGTACAGAGACAAAACTGATAAAAGCATCTGAAATGCCTTGACATATTTTGGCACACATCAATATTTGGCATTTTGAGatatcgatatatatatatagaagttcatttattcatatacAGATCCATACCATCTAAATGGTGAAATGCAGAAGGTaaaatattctttctttttttttagtttctttttttaattaaaagacaGAATTATAAAACTACTGCTTGCATTGTCCATAGGCCAGAAAAACGGAACACAGtgatccaaaaaataaataaataaataaataaacatcacaacaaaacaaaccagtGAGGAGAAGAAACAAAACTACTtaaatcatttagtttttttctcaaTCATTTAGCATTTGCATGGTAACATTAACATCAAATGAACAAAAGTGtaattatatacatcatttatcATACAGATCTCATATAATAAGAAACGATTCTAGTCAAACAtttgatttaatatatttatcatGTAGACCAAGTAAACAAAATCACATTTGACGCAGATGATTTGTGTGCTTGAGTTCTTGAGAATCCAAAAACACTTTGCAATGCAAACAGGAGTGGAGTTGTGTTTTTCCAGTAGGAAGGATTTAACATTGTTCCTCAGTGCAGCATTGCGATGTCGTCACTTACAATGTGAAAAGAAATCGATGAAAACTGGAGCCAAGTGATTATGCGAGCGAATACATGAGGTCATAATATGTGTGCGTATTCGAAACGAGAACTTggaaatgcaaaaatacacaaCTTTATAGATGTGTAGCTACACAAAGTTGAAGTTGTCTGCATATGCACACGCGGCCATGTGCCTGTATACCTTTTTTACGTCTGTTTTTGCAAATGTACACGTGACACGCTGGCCAAAATATGATTGCACTGAACAGTAAACGTGATAAAGTGTGTTTAAATGGATCTGACATCCTGTGTATAGATGTTGTGATTCATTGAATATGGAATAGTTAactattattatgtatatatatatatatatatatatatttatttatagtgtgtctgtgtgtgtaagaaTATGTACACGTATGAAAGTGGGGGTACAGCATGCTTGCaccagtgtttgtgtgtatgtgtgtgtaaggcACTCAGGACAGCTCGCTCACACTCAGAGGCATTGCCATGCCAGGTCTCAGGTACGGCACAGCATGGACGGCTTTAGAGAAGTCTGGAGTCAGCACTCGCCCGTTCTCCCCTGTACTGCCCGTTATAGACAACCTGGCCTTACTGCGCATAGCATCTGTGAACGTCATCTGTTCCCAAACATACACCCACACCTTCATGCGTTTGGCCTCCGCGCGCGACTTGTAGCAGAACTCCACCAGAGCGACCAGCATGGCCAACCCGAGGCCGCCAACCAGGATGTAGAAGACACCCGCAACGTTACTCAGGCTGAGGGCGCTAGTCTTCTCCTGCAGGGGGCGAAGGTCAAAGGTCAAAATAAGGGAGAGAAAAGACGACAGTATGCCAAAACCACttattataatactatatataaatatttaacacattACGACTTTAAAGATAACAGTATTCAATTGACTAGAcaaatattacagtattattaaatgtgtatatatactgtatatgtaaacGTCTAACAGTACTTCACACAAAATACACAGACGGCTACAAAAATACAACAAGACAGTGCGGTGCAGTGTGTGCACataaagaaggaaaaaagacgCCACCTACAGAATTGCAATTAAAGACAGCTTAAGTAAAAggcaaaaaatacaaacaacatTTACAGCATTGGTGAAGGGAGAAGGAGAGACCGCatggggagagagaaagagagataggagggagaaagagagagcgtaagaaagatataaaataaaaaggaacaGGACAAGTTGTCAATAAAGCACACAGAAATACAAAGGAGCACAAGGAAATTCTGAGCCTATACAGGTGtggtgtttgcgtgtgtgtgtgtgtgaggggaaTGTGGATCGAGTACAGAGTAAATGATGTCTTggctagtgtatgtgtgtggcatGCATTACTGCGTGTTTATATCACATCCCTGTTTGTATAGGCATCATTGATTGTATACACAGGTCAGGCTCTGATTCATGCGGTGGTAAATCTGTGTAGGGGGGCTtgctttgacacacacacacacacacacattaacataaGCTGTAATTCTTTTTTGCACAAGCTTCCTTTAATATCGCTCTCATACTCTTTTCCTCTCCAAtacacgacacacacacatacacactagtCTGCTAATGCTTGGGTTTGTATCCCCCAAACTgagacagttttttttacagattgTCATGCATACGCACATACACATTCTAGCCctgccagacacacacacacacacgctccctgCAGTGACTGACCTTACTTCCAGAGTCCTTGGCTCCACATTCTCCCTTATCGTACCACCATTTGTTTTTCAGCTTGTCTAAGATGCCTTGCTCACTGAGTTTCAATACTGCAAGGTTTACTGGCGTTCTTCGCGTATGGgaaataacataaataacattaccaatgttattttatgttattgtcAGTAACATTTGCACTCGCTAACAGCGCTGGTCATGATTCAGCCCTGAGCGTGGTGGCGATCGACAGTCTGCGCTCCATTTGGCAGTCGGCAAACGCGGCTTTGCCGTGCCAGATGTGCACAGACTCATCGCCGCGAGCAGGAAGCAGAAACAGCGCCCGCCAACGAGCCGTATACCTCTGAGAATCTGTTTTTTAGGTTGTCTGCATTTCATTCTGGACCAGATGTTGTCGACAAACTGGCCAATTGATAGCAGCTTTGTAGGCATTAGGCTTGTCTTTCTGGGTTCTCTGGTAGTGCTTCCTGCTCATTTGCATTTTGTTCATTTCATTTTGAACCCACAATCCCGAGCACGGGTCTGACCTTTGACTCCCCGCCTCCGCTGCCGCACTCTCCTTTGTCGTACCACcatttgtttttcaatttatCCAGAAGCCCCTGCTCGTTCAGTTTTAGCACTGCAAGGTTTACCGCGTTTCTTAAACAAACGATAAAACATACTTGTCAGACAGCATGGAGGGGGGCGGGGCTGCAGCGGGCCACGCCCCCCAAAAGTCGCATAGAATGAATGGAACATTGGGTTAGACAATCCATCAATCAGTAAGTCAgtcaaatcaatcaaccaatcaaaatTGTATTCAACGACCCATCAAAATGTAAGGTGGTCGAGCTTTAAGAgttctttttttgtaaactcaaacTCTTGAGGCAGGAGGCTAGAACAGAGGAGGATCAGTGATAGTATCAGTTATTGCTCAAATGCACATCCAGATCCTCAAATCAGTTAGCAGAGAACATTTTAAGCGTTGAAGCAAACAAACCTGGTTAGAAGTATCAAGAAAGACAGCATGCATAGTTCAAACGGTGCATCATCAAATGCATTCATAATCAAGTTACTGTTCAGCCTCTGAATCATCAGCTTAGACATTCTGTAATGCTTATGGCGACCATTCAATTCCAAGAGCCCAAACGCATGCATTGATTACTGCAGATTTTCAGTAAATAGCATTTGTCATAACATAACAGTCTGGTTGCAAGAGGCCATTGCATCAGTCATTAAGAACTGACATGCATTCAGTAAAACAGATGATAACGGCAAACGTGAGTAGAATTAGCCTGAATATCATTAGTAACGATATCCTTTCCAATATTTACTACGCCACTATGCTTCAATTTAGAGAGAATAGAAAGCCATTTTAAGTTTGCCAACGTTTGCTCCACTGAAAACATGGCAGTTGATCATCATCAGCAAAACAGGTGAAAAAAAGGCTTCAGAACTCTTCAGTAGTCTGTTGGAAATAACACATCTGAAACCTTCTCTTCAGTTAATATCTACTAAGCTCCATGAGCAGACCCGGTATTTCCTGAAAAAGAACCACACAAACTAATCTATTTCCTTTAGGGCTGTGAAAAGTTAGAATGGTAACACAAGCAAttaattgaaaacatttttttcacatatcagaaaatttaaacaaatgaaatgaCGGGTAAATCAATCTTTAAAGAGTTGAGTTGCCACTCTCTTCATTTAATTCTAGAGATCAACCAATAATTGATATTACAGATTTGCAATAATTAAGCATTACTTTTAACTAGATTTGGGTTTTGTAATATCAGATCCACTGATAAAAGTTACACAGAACTGTTATTCAGGTTTAACAATGATAAAATATCATGTGTTAGACtaggtacagtgctcagcataattgagttcacccaattttaaaaatgaatatttgtatccatttctcattaaatataggcaatgtattttggtgcatttaagcaaagccaatttattaaacatatatatttattaaaatagtattttagtcaccaaacatatttataaattgaaagacaatacaattaaattcaagcaaaatattgctaaataaattacaacctacaaaattttaactaaatttagcacttttttttgtttctcttgatttttcctctttttaaaattagtatttaaatttttttctataacatataaatttgggtgcactagtttttggaccattattgcaagttatttttccagatttggcttcagtactgactaatctaatgtacagttgaggtcagaactattcgcccccctttgaatttttttcctattttaaatattttccaaattatgttgaacagtgcaaagatattttcacagtatgtctgataatatttttttcttctggagaaagtcttatttgttttattttggctagaataaaagcatttttaaattttttagaaaacattttagggacaaaattattagcccctttaagctaattttttcccccgatactctacagaacaaaccattgttatacaataacttgcctaattacccttaccagcctatttaacctaattaacctagttaagcctttaaaatgtgactttaagctgtatagaagtgtcttgaaaaatatctaatcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagaaatgagtattaaaactattatgtttagaaatgtgttgaataaatctctccgtcaaacagaaattggtggaaaaaataaacagggtggctaataattcagggaggttataattcttacttcaactgtatatgcacaaatataatattttattaaaaataagaatttaaaagatagatttgtgatggttgtacttatatatgctgagcactgtatatgaaaATGAATACACCAGAGCTTCCCAAACTATGGGCCTCAACACCCTGGTGGGCTACAGGGAGTCCATGGCCAAAGGTAAATCAACAAAATCAAAATATTGTTACAATtacattttgtttagtttaatagTCATGTTCTATTAATTTTCTTTGTCTTGGTTTTCTCTTGTTTTTGTGAGCATGGGTTCCATTGCAAAGTAtccatgataaaaaaaaagtatctttaGGTTTGGACTTATAAATGCCAATGTAAACACTTAATGTACCAGGTCCAAAAGCATTATTATCTTTTTTAGGTCTGGACATTACAAACCAAGAGAAATGAAGTGCATGTTTGAACATTGCTTCATTAAAAAAGAACATGAGTATAGGAGTTCAATCTTTAAGTTAAATTAGGTCTGTTTTTGTACTCCAATGATTtgcttttctgttgtttttctaCCCAACCATGAACTAGACTTGTTGCCCTTGGGTCTTTCGCAGAACATCACAGAACATCCATCACCCTTCCGTCTAaatttagttgcagcagtttcatTTCAACGTTGTTAAGAACATGGATCATATCGATTCTAAGTGTGAATTCTATTTGTAAAGCTTGTTTTAGAGATTGTCTTAAGTTAGtgtttagttttatatattttttaaaagaatatagCTAGCTTTTTTACCCTCACCAGAATTtgatttgtacattttattgcagtaaataaaacaaatggaagCGTTCCAAATGATAATAAAGGATTTTTATATATCTATGTTGTGTATAATACACCAGTGAAGTTTGGGGAGCTCTGTGTTACATTAATTCATATTTGAAGATGCATAAAAGCCACTAAATATACCTACAGTAACTCAATAATTACaccatttattaacatttaacgatttttatgattaatattaacatgttaaataataaacatttgaatGAATTGCTTACCTATATTTTAATCCAACAGCCCTAAaagataaatgtattttattatgctGCTCACttgctattttaatataatagttaataataagcTGAATAAGTTAATGTTAAGCTAGCTCTTTATTTGTTTGATACTAAATTATTCTGCTTTTTCTAAAGCGTCATTCCCAGAGAGCACCGGCTGCTAGGTCTCCTGCTTGTCAGCTGTCAGCTAGCATTTCTTAAGCCCTCGCTATCTCTGCAGTTTCCTTGCTAAGTCTCTACCCTGCTGTTTTTGCCCATCTTGCTTAGGTTACCATTCTTCCCTACTCTCAGTTCTGCTATTACCTAGTTTACCTCATTTTAAAGAGGACCCCCGGCCTACATCAGGGTAGGTGGGATACTATAACAACATGGGCCATATTGTTATACTACTCCACCCACCTTAAAGCAGATCCCTTGGGTGTGGCGATGCCGTAGCCTTTAGAGTCAAGGTTCCCTCCGACCTTCATGGTGTCGCAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0032501 multicellular organismal process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051648 vesicle localization biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003063 lncRNA upstream 393161 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003062 lncRNA upstream 1184055 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00002829 lncRNA upstream 1302538 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00002828 lncRNA upstream 1303678 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000412 lncRNA upstream 1510409 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00003066 lncRNA downstream 158992 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00000439 lncRNA downstream 609605 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003067 lncRNA downstream 1169081 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA downstream 1169408 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000462 lncRNA downstream 2037355 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000431 mRNA upstream 19008 21309386 ~ 21312596 (+) False XLOC_000261
TCONS_00000432 mRNA upstream 19516 21309404 ~ 21312088 (+) True XLOC_000261
TCONS_00000429 mRNA upstream 393092 20936711 ~ 20938512 (+) False XLOC_000259
TCONS_00000427 mRNA upstream 625308 20635387 ~ 20706296 (+) False XLOC_000258
TCONS_00000428 mRNA upstream 626607 20635392 ~ 20704997 (+) True XLOC_000258
TCONS_00000433 mRNA downstream 221658 21563311 ~ 21566376 (+) False XLOC_000264
TCONS_00000434 mRNA downstream 221681 21563334 ~ 21573013 (+) False XLOC_000264
TCONS_00000436 mRNA downstream 384168 21725821 ~ 21815554 (+) False XLOC_000265
TCONS_00000437 mRNA downstream 389729 21731382 ~ 21815554 (+) True XLOC_000265
TCONS_00000438 mRNA downstream 595548 21937201 ~ 21971913 (+) False XLOC_000266
TCONS_00000430 other upstream 77122 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 1350617 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 1512508 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 1516155 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 1625772 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000435 other downstream 222853 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 1179559 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 1933269 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 2162681 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 2409446 23751099 ~ 23751213 (+) True XLOC_000283

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU4040 False 9514 lncRNA 0.46 3 NC_056699.1 12337642 ~ 12348940 (+)