RNA id: TU4040


Basic Information

Item Value
RNA id TU4040
length 9514
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G2790
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12337642 ~ 12348940 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccttAATGGAGTTATTTCGCTTTTTATTACATCAGTCCAGGTCACTGAGTTTCCCGTGAAGCTGCACCTGTCACAAAAACACGATTTTGTTGCTCGCAGTTTGGTTTTGGTAGCTTAATGTGAAGAATATTCCACGTATGTGTTTCCACATgttctgtaagaaaaaaataggCATCCTAGATAAACGCTTTGAACATTTTCATCTCCTGTGTGTTAATTTTGGACCCAAGATGTGAATTTATGAGAGAACAGCTGACATGCTTGTCAACCCCCTCCTGCGGCACTTTTCTCCTTCGCATGAAACAGAGGAAAACAGAATATCAGAGGATTCTCAGTCTCTGTTTATTCCAAAAGattccaaaaaataaagcaatcggtccacattccatttagaaaaaCGTCCTCCATTTCATCCCATGGCAGACTTTCCAACTGAAATGATGCTAGTGATGGCAAGTCCATTTTGTGTGTCTTTACGTGAGAGACAGCTTGGTACGACGGTCATGTTCCCAAACGTGCTGCCGAATGCACAATACGAGCAATCCTcttgtgtgcgtctgtgtgaaTTGGTGTATCATCCAAGATTTTAAGTTATACACATGAATGGTTTCTATTTACatgtacagtacatatacatataaaactaATGAACAAGATTTCAGTTACACAGCATGGCATAGAAAAGGGTAATCGGCTTATACTTTATCAATATAACTATCTGTAATAATCATCTCCATCTCTTAGTCTCAAGGTCATAACTGGACTACATAAATGAAAGTCCTAGTTAACTAATCTTAGTGATACACGTAATCATcgcttttataaaacaaacataactaAAGGTTGTCATGCTTTTCACAGTTAAAACTGCATATCGTAGTGCACCTTATTAAAAGTACAATGCATCtgatatgaaaaacaaaactaactaacaaaaaaaagccaaagaTGACATAAATAACAACCCCCTGATTATAGGGTGCTAATTTGAAGTTGTAACATTTCCCCATATAGAGACAATATTAATAAACGCATCGGAAATGCCTTAACATATTTTGGCACACATCAAAATTTGGCATTTTGGGgtatcataatatattatattaagttCATATATTATTGTACAGATCCGGCTTAATCAATATAACACTTTCAATATGCCATCTAAATTGCGAAATGCAGAAGTTATAgtattctttatttgtttttcttttttaattaaaagacttATAGAATTATAAAACTACTGCTTGCATTGCCCACAGGCAAGAAAAAATGGATCTGAACACactgatccaaaaaaaaaaattaacatcacAACAAATCAAACCAGTGAGGAGAAGAAACAAAACTActcaaatcatttcatttttttctgtaagtcAAGCATTTGCATGGTAACATTAACATCAAATGAAcaaaagtgtaattatatacataatttattatacatatctcatataataagaaatgattccagtcaaacacttttttaaatatatatcatgtaGATTGAGTaaacaaaatcacatttgaTGCAGATGTTTCGTGTGCTTGAGTTCTTGAGAATCAGAGATTCCAAAAAACACGTTGCTATGGAAACAGGTGTCGAGATTTTCCCATAGGAATTATTTTCAATGTGTAACGTTGTTCCTTAGTGCAGCATTGCAATGTCACttacaatgtgaaaaaaaacgTCCACGAAAACTGAAGTGGGGCAAGTGTGTGAATATATGAGCGAAATGAGGTCATATTATATGTGCGTATTCAAGTGTGTGACGAAACGAGAACTTgtgttatgtaaaatatacacaacaGGAAACTATAGGACTGTGGCTACACAAGGTTTGTGACGTTATCTGCATATGTACACACAGCAATGTGCctgtatactttttttatgtgtctGTCAGcgtggttttctttttttgcaaatgttggATGTATACATCACCGCTGGTCAAAATGTGATTGCACTGAACAGTAAACATATGTGTCTATGCATGTATGGATTTGACATCCTTAGTATAGATGTCGTGTTTAtagtatagtatttttttaagaatatgtacacgtgtgtgcatatgtatgaaAGTGGAGGTACAGCATGCTTgcaccaatgtgtgtgtgtatgtatgtaaggCACTCAGGACAGCTCGCTCACACTCAGAGGCATTGCCATGCCAGGTCTCAGGTACGGCACAGCATGGACGGCTTTAGAGAAGTCTGGAGTCAGCACTCGCCCGTTCTCCCCTGTACTGCCCGTTATAGACAACCTGGCCTTACTGCGCATAGCATCTGTGAACGTCATCTGTTtccaaacacacACCTTCATGCGTTTGGCCTCCGCGCGAGACTTGTAGCAGAACTCCACCAGAGCGACCAGCATTGCCAACCCGAGGCCGCCCACCAGGATGTAGAAAACGCCCGCAACATTACTCAGGCTGAGGGCACTAGTCTTCTCCTGCAAGGGGTTGAAAGTCAAAGGTCAAAGATAAGGGAGAGAAAAGGTGACATTATGCCAATACTACTAATTatcactatatataaatatacacatatacatatataaatatacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagattacGACTATAAAAACAGTACAGTATTAAGTGTGCATATGTGAGTGTCTAACAGTACAtcacaaaaaatacaaagacGGCTACAAAAGTACAACAGGACAATGCGGTGCAGTGTGTGCAcataaagaaggaaaaaaagacgCCACCTACATAATTGCAATTAAAGACAGCTGAAGTAAAAGGCAAATatacaaacaacatttacaGCATTGGTGAGGGAGAAGGAGAGACCGCatgggaaagagaaagagagataggagggagaaagagagagtgtaagaaagataaaaaattaaaaggaacaGGACAAGTTGTCAATAAAGCACATAGAAATACAAAGGAGCACAAGGAAATTCTGAGCCTATACAAGTGTGACTATGCGTGTTTGTGCGTGAATGTGAATCAAGTACGCGCTTGAGTGTGCATAAAATATGTCTTTGCTATGTGTCACTCGCATGCATTACTGTGTGTTTACATTACATCCCTGTTTGTATAGGCATCATTGATTGTATACACAGGTCAGGCTCTGATTCATGCGGTGGTAAATCTGTGTAGGGGACTTGctttgacacacacatacacacacacacacacacatcaccataggctgtttttctttttttacacaagCTTCCTTTCATATCACTCTCATACTCTTTTCCTTCCaaacacacatagacacacacatactgtacacacagtCTGCAAATGCTTGGGTTTGGATCTCCCAAACTgagacagtgttttttttttttttaatttcacatacagtacacattcTAGCCctgccagagacacacacacacacacacacacacgctccctGCAGTGACTGACCTTACTTCCAGAGTCCTTGGCTCCACATTCTCCCTTATCGTACCACCATTTGTTTTTCAGCTTGTCTAAGATGCCTTGCTCACTGAGTTTCAATACTGCAAGGTTTACTGGCGTTCTTCGCGTATGggaaataacataaataacattaccaatgttattttatgttattgtcaGTAACATTTGCACTCGCTAACAGCGCTGGTAATGATTCAGCCCTGAGCGTGGTGGCGATCTGCAGTCTGCGCTCCATTTGGCAGTCGGCAAACGCGGCTTTGCCGTGCCAGATGTGCACAGACTCATCGCCGCGAGCAGGAAGCAGAAACAGTGCCCGCCGACAAGCCGTGTACCTCTGGGAATGTCTTTTTTAGGTTGTTTCGGTTTCATTCTGGAGCAGACGTGTCTTACTGAAAGCTCTTGCTGACCAGCTGACgtaataatttgaatttgttGGTGCCTCGGCTTGTTTTCTGGAACGGCTGGTAGTGCTTcctgctcatttgcatttcgttcatttcattttttacccAAAGTCCCGAGCACGGGTCTGACCTTTGACTCCCCGCCTCCGCTGCCGCACTCTCCTTTGTCGTACCaccatttgtttttcaatttatcCAGAAGCCCCTGCTCGTTCAGTTTTAGCACTGCAAGGTTTACCGCGTTTCTTAAACAAACGATAAAACATACTTGTCAGACAGCATGAGGGGGGGCGGGGCTGCAGCGGGCCACGCCCCCCACAAGTTGCATAGAATGAATGGAACATTGGGTTAGACaatccatcaatcaatcaatccatcaaatcaaccaaccaatcaaaatgactTTAAGCAACCCATTAAAATATGAGGTGGTCGAGCTTTTTTAAGAGTTCTTTTTTAAACTCAAACTCTTGAGGCAGGAGGCTAGAACAGAGGAGGATCAGCAATAGTATCAGTTATTAACCAATCGCACATTCAGATCCTCAAATCAGTtagcagaaaacattttaagcattgaGGCAAACAAATCTGGTTAGGAGTATCAAGAGAGACAGCATGCATGGTTCAAACAGTGCATCATCAATTGCATTCATAATCAAGTTACTGTGTTTTCAGCCTCTGCATCATCAGCTTAAACATTCTTTAATGCTTATGGCAACCATTCAAAATCCAAGTGCCCAATCGCATGCATTGATTATTACTCATTATCAATAAATAGCTTTTGTCATAACACAGTCTGGTTGCAAGAGGCCATTGCTTCAGTCATTAAGAACAGACATGCATTCAATAAAACAGATACTGAAAGGCAAACATGAGTAGTGAGTTATACTAACCacatacaaaaattttttttactactacACTATGCTTTGTCTTAGAAAGGGTTTAATGTAAGTTTAACAGTTTCGCAATGTTTGCTTCATTGAACACGACAGTTTATTATCAGCAAAAAAGGTGGAAAAAAGGATTCAGAACTTAAAGACTATTGAATAAATTACACCTCAACCCTTCTCTTCAACTATTTACTGAGCTCCATGAGTAGAATGTTAATTCCTGGAAAAGAATCACATGAACTAATCTATTGTGTTTAGGGCTGTCAAAATAAGAACTAGAGATGCACACTATGAGATTTTGCTGATATccgatatttttttaaatcattttggcCAACAGCTGATCTTCATACCTATatatttccctttgttttgaaacaaatcTCTTTTGTGCTAAAAttctaaagaaaatgtttagaatttgttatttttgagcaaaaacatctttgttaaaactaataaacattattaaagttgatattattaaattttacattattatattatagcttTTGGCCttcaaaaaagatattttgtgacattatttaGTCAGAAACACTGTctgtataaaaattatataaaataatatcttaatgtgaattttactttattttacaagtAAACCGGCCCCTAAGTAAATAAAACCCTGTGTGGATGGGCATTAGGGAGTGGGGGAGGACGCTGCTACTGTACGCACTAGTGAGTGTTCACTCTGTCACAGATCATGTCGTTCTGTTGTGCATTCTCACTTTAAATGTAGCGATCCAAAACAGCGAATCTAATCATCATTCAGGCAAAGGTTTGCTTTAAGAATGACCACACTATAGAGCACATGTGAGCTATCTGTCTTGTCGGCAaggcttttttaatttaatttgtttaaaccggacaatttttacattttaaaccattattGGCCAATTCTGATAACCTTTTGACCATTTTGTACATTGCTAATAATAAGGATAACAAAAGCTATATAATGAATTGTTGTTGACaccattaatgtattttttagatatttgcaAACCAGGagcaaaaattttttttttttatatttcccaTTACTCATTTTAGAGATAAGTGGTTTTAATATCAGATCTTTATTCTGATATATTCTTAATACCAGATCATTACTCTTAATATTGCATCTATCAATAAACATAGGAAGCTATTAAGTGATTAGCTTACAGCACTGTTAAATAGTCCTTTGAAGTGCATTAAGTATgtgcaaattattacattattattgcaGATGCATATATAgccacaaataattacaaatatcaTTTACCTTTATAACAATAgcaattaaatgtgttaatacaaaaaaaatacaaaatgatccACAATCCAATATTTCCATATGACAGCcctaataatttttatataatcttaattaatttagcatattATTATGGTGCTCACTCACTCCCTGTTAAAATCTTAAAACCTAATTTGTTGTACCTTTTTGTTTCAGTCTACACTATACTCCATTTTCTACACCATCAGTCTTGGAGAGCACTGGTTGCTAGGTAACCTGCTTGTCAGCTGTCAGCTAGGCTTTTTAAAGCCCCCCACCGTGTGCAGTTTCCTTTGTAACTCTATACTGCTGGTTTTTCCATACATCCCTACACTCAGCACTGCTGTTACCTAGTTTACCTCATTTTAAAGGGGGACCCCCGGCCTACATCAGGGTAGGTGGGATACTATAACAACATGGGCCATATTGTTATACTACTCCACCCACCTTAAAGCAGATCCCTTGGGTGTAGCGATGCCGTAGCCTTTAGAGTCAAGGTTCCCTCCGACCTTCATGGTGTCACAGGGCTTGCGCTGCTCGATGTACTCATTCATAGTGGACTCCAGAAGGTAAGCATATTTGCCTTTGGATTTTCGGACACGCAAAACACCTTCCActgtgtttttaacaaacacagAAGGCTCTGCGCTCTTCATGTACTGCCACATCTTGTCAAAGAGAGCAATCTTAGATCTCTGGTTAAAGCAAAGAAAGACATAAAgatgaagacaaaaaaagagaggttTAGATTCAGGTTAGTGATGACGTGATGGTTAGCTATGTCAGGAATAAGTCAACAAcgttgaatttttttctttattggaaaaagatttggagaaattttgcattacattacttgATCACaaatgaatcctctgcagtTAATGGGTGCCGCGAGAATTAGAGTCCAACTACGGGCTGGTATTTTGGTCAGGATCCCTGCtttggtgacactttattttaagtcttGTTAAGTCTCGTTATTAACAAACTACTAACTATgacttttttcctcaataaTTTTCCaattttcttcttattaatGTAGTTAATAAGATAGTTGTTGCATTTAAGAATTTTGTAGGATTATGGATATCGAATATGGTCGtgcagaatatatataaatataaccagCCAATATAATAAAAGCTTTACCTGCAGTTAATTGAGTTgtcttcatcagctgtttgacctgttattctgacagcacccattcactagaGAATCCATtactgagcaagtgatgtaatgctaataAACAAAGTCATCTTGGATGTCTGGAGGTTGAGTCAGGTTTTATTGggataacatttatatttattattctctTAAGCAGATTTTTTCTAAAATAGTATACatactgaaaaacatttatcttattCATGACatgacaaatataaatgaataattcatgatttgtggaaaaaaaaacattgtatatttaaaggggtcatcagatgtaaaattcacttttacatgTCGTTTGAACTAAAATATGTGTTGGCAGTGTGCATACATAACCAAtatgtaatgataaaaatccacccaGTGTTTTTTTCAGTCCCAATAAATCATGAGCAGTGACTCAGATCTACTCCAAGTCCACCATTGTTTTGATGTTGGAGCAGGAATGACCTCTAAGCAACTGAGGTGCTTTGTTTCTGGGTGTAACAATAAACACAGCAGTCATCATTTACAAACAACATCTGAGCCGCTAAAGATGCAGAGGATTACTTGACTTTTTAAAGACTGCATCCCCAATCTAGCAAATTGCGTCTCTGTTTGCACAAATTATTCGTAATCCATCTTAACCTCTAGAAGAATtgagtatattttttatgaatctttgcTAATcatcttttctaaaaaaaatgctagttAGGAAGTTTCATGATGAATGCAGCTAAAGTTTACAGTCTCATGATAGTGACCTGTCACCCACAGAAAAGAAAGGTGGGGTTaacagagctcattagcatttaaagggacatgcaCCGAAACTCAGTGTGAACAGAGCTGCTTTTTTACATCCAAAATGGGTGTTATTTTACAGtaccattgagaaattttaaccaaattATATTACAGACTTATCATTATGACCCTAAAGAATTATATTAACTTGAAATGGGTATCCGATGGCcgatttaaatgcatatttttgaaaattatgttTACACTCATGTACTTAAGGTCTAaggaaaatatgttattttttttgttactgatGGTTGGGCCATGGCTAGTTAGGACAGTGCCTGTCTGCAGCCCTTCCATACGATCCACACTGGTTCACTCACCCTAAAGAACTCTTTGGTGGAGCCTGCATCCAGTGTCCCATAGGCAATCTCAGTCTGTTTGGCCAGGTCTTCAGCACTCTCGATAGGTGACACCATCCTCTCCACAGTGAGAAAGGCAGCCAGGTTAGCAGTGTAGGAGGAGATGATGATGAGGGTGAAAAACCACCACACACCACCAACTATACGACCAGACAAGGACCTACACACAGCAAACACAGTCAGCCACACACAAACGATCACACACTCCACCAACAGAACCAGCTTCTTGTTACTATAAAGTCcagaagaaagaatgaaagaaagaaagaaaaccctttcactttggataaaatggGGAATATGCAGCCGAAACACGGTACCACTCCAAGAGGGCAAAAAACGGCGACCTTGTGCATCTTACTGTTCCCAACCGGGTAAGTAAATGTTCACAAAAGAAATGTCCAACCAAAGGTTAAACCATAtctttgattaaacatttcTAATCCTGTGTTGTCTCTGTCTTCTTTCTCTTGATACACTGAAGTTGGGGACAAGGGAGTTATATAATAGGTTATTTGCAATGGAAATGGATAGGAAGCATGAGCTGCAGGAGCGTGAACATCCACAAACCACGGCATCGGTGGGAAAACCGTCGATGCACAAAGCCGAAAGCACACCCCACGCGCTAGCCAGCTAGCTTCAGTGCCCACTGCATGCACCAACCTTGGCGAAATATCGCATCCCTGCTGCATAAAAGCGCCCAGAGAAAACCACAGACTATTAAAGATTCCGAATTCGTTCGTAGATTCGCTAGGGCCCAGCTGCCCGTCCTCAAACTCCTCAGTGTGCCACTCGTAAGGGCTGAAGCGGCTAACGAGGAAGAGCACAACGCTAACTCCGATGTAGGCGAATACAATACACATCCAGATCTCGTAGGCCAGCGGGTCCAGGAAAGAGAAGACACCCGGCTTGGATTTCTGTGGTTTCTTGATCATAATGGATATGCCCAGACTCATGAAAGGTTTTGAGAAGTCGATCACCTCCTCTCGGACCAGAGTGATGGTGAGAGGAGCTACAGCTATGTCTGCTTTCTGTTAAGAGTGAAAAGAGGAGGAATTAGGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4024 lncRNA upstream 47176 12290122 ~ 12290466 (+) True G2782
TU4009 lncRNA upstream 86864 12248498 ~ 12250778 (+) True G2767
TU3945 lncRNA upstream 415277 11920739 ~ 11922365 (+) True G2711
TU3851 lncRNA upstream 488365 11848131 ~ 11849277 (+) True G2648
TU3864 lncRNA upstream 489630 11793561 ~ 11848012 (+) True G2651
TU4059 lncRNA downstream 41172 12390112 ~ 12392194 (+) True G2806
TU4041 lncRNA downstream 43670 12392610 ~ 12395729 (+) True G2791
TU4081 lncRNA downstream 77605 12426545 ~ 12437258 (+) True G2820
TU4082 lncRNA downstream 90792 12439732 ~ 12440108 (+) True G2821
TU4122 lncRNA downstream 148701 12497641 ~ 12497869 (+) True G2847
XM_043236969.1 mRNA upstream 5740 12328136 ~ 12331902 (+) True LOC122342830
XM_043247831.1 mRNA upstream 15184 12318615 ~ 12322458 (+) False LOC122351007
XM_043247841.1 mRNA upstream 15184 12318615 ~ 12322458 (+) False LOC122351007
XM_043247824.1 mRNA upstream 15846 12318615 ~ 12321796 (+) True LOC122351007
XM_043249218.1 mRNA upstream 25127 12310519 ~ 12312515 (+) True med28
XM_043243829.1 mRNA downstream 200988 12549928 ~ 12590890 (+) False pax5
XM_043243855.1 mRNA downstream 200988 12549928 ~ 12590890 (+) False pax5
XM_043243846.1 mRNA downstream 201243 12550183 ~ 12590890 (+) False pax5
XM_043243837.1 mRNA downstream 203953 12552893 ~ 12590890 (+) True pax5
XM_043243521.1 mRNA downstream 295739 12644679 ~ 12658507 (+) True kdm4c
TU3862 other upstream 497476 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 1027178 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 1356286 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 295739 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 295739 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 337305 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 364592 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 854313 13203253 ~ 13205688 (+) False rhoh

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003065 True 7421 lncRNA 0.36 2 NC_007112.7 21331604 ~ 21341653 (+)