RNA id: XM_043243846.1


Basic Information

Item Value
RNA id XM_043243846.1
length 1686
RNA type mRNA
GC content 0.54
exon number 12
gene id pax5
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12549928 ~ 12590890 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACCTCTAGCCACGGCATGGACTTGGACCAAAAGGGTCCATCTCTGCGCATCGGACGGTCGGGCCTGTTCTACTGATCGATGGAAATCCACTGCAAACACGACCCGTTCGCAGCGATGCACAGGCATGGAGGGGTGAATCAGCTGGGTGGGGTGTTTGTAAACGGGCGGCCCTTGCCTGACGTGGTGAGGCAGAGGATAGTAGAGTTGGCCCATCAGGGCGTGCGTCCGTGTGACATCTCCCGCCAGCTCCGGGTCAGCCACGGCTGTGTCAGCAAGATACTGGGCAGGTACTACGAGACAGGCAGCATTAGACCGGGGGTGATCGGAGGCTCCAAACCAAAGGTTGCTACACCCAAAGTCGTCGACAAAATCGCTGATTACAAACGCCAAAACCCCACCATGTTTGCCTGGGAGATCCGAGACAGACTGCTggcagagagagtgtgtgataATGACAGCGTGCCCAGCGTCAGCTCAATCAACAGGATCATTCGCACTAAAGTCCAGCAACCACCTGGCCAATCAGGAGCCGTCTCTGCCCACAACTTAGCCTCTACAGTGGCGGTGACCCAGGTATCTGCAGTAACCAGCGATGCTGCAGGCTCCTCCTACTCCATCAGTGGAATTCTGGGAATTAGCTCACCTGCCGACGCAAGCAAGCGGAAGAGAGATGAAACTCTACAGGATTCTCCTTTGGCGAATGGCCACGCCCACTCAGGGCGGGACTTCCTGCGGAAGCAAATGCGAGGAGAGCTCTTTACGCCGCAGCAGCTCGAGGTATTGGACCATGTCTTTGATCGACAGCCATATCCCGACATTTACCCCGTCCCTGACAGCAGCAGCTACAAGCCCGCCCAGACGTCTGATTACTCGGCTATGGCGTCCTTGGCTGGCGGACTGGAGGAGATGAAGAACAGCTTAGCCAATCAGACGGGAGCGGAACTGGGTTCCACTGTTGCAGGACCTCAATCATATCCACTTGTGTCTGGTCGCGACCTGGCCAGCACCACGCTCCCTGGTTACCCTCCTCACGTTCCTCCAACTGGGCAGGGCAGTTACTCCACTCCCTCCCTCACAGGAATGGTACCTGGAGGAGATTTCTCTGGCAGTCCTTATTCCCATCCACAGTATTCAACGTACAACGAGTCTTGGAGATTTGCAAACCCCAGTCTACTAGTGTTCCAGCAGGAGTACGGTTCCTTACTGGGCTCGGAGAGAGCAGCTTCATCGGGTCTGTTCCCTGGACAAACCCCACAACCTACAGGATCTCCATACTACTATAGCGCAGCCACACGGGGAGCAGGAGCGGCTGCAACAGCAACTGCCACTGCCTATGACCGCCACTGACCAGCCGGACAGAGGACAGGAGGAACGGTGGAGGAgcgggagaaagagaaagaaagaggagagagaacGGATTGATAGCAGCCACACAAGACTGTCTACACACGAAAGCAAAGCAAGGAGCAGGAAagggaaagaagaaagaaagaagaggtgACAATGTTTTCCTGCCGATTACAATCAATGGTCCAATCAGTAGCTTCAGCTGATGTTTCTAATTTCTGTCGATTAGTGGAAAGTATACACCCATTCACCTGTATTCCTGTGGTCTCGGCTCACACTAAATCTGTTATTGCTTTGATTTATCTTCTGTCATTAAAGCCTTGCTTATCCTATCGTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4122 lncRNA upstream 52314 12497641 ~ 12497869 (+) True G2847
TU4082 lncRNA upstream 110075 12439732 ~ 12440108 (+) True G2821
TU4081 lncRNA upstream 112925 12426545 ~ 12437258 (+) True G2820
TU4041 lncRNA upstream 154454 12392610 ~ 12395729 (+) True G2791
TU4059 lncRNA upstream 157989 12390112 ~ 12392194 (+) True G2806
TU4201 lncRNA downstream 203977 12794867 ~ 12873669 (+) True G2918
XR_006251341.1 lncRNA downstream 263872 12854762 ~ 12859351 (+) True LOC122348548
TU4237 lncRNA downstream 345687 12936577 ~ 12937470 (+) True G2948
TU4275 lncRNA downstream 432538 13023428 ~ 13137686 (+) False G2967
TU4276 lncRNA downstream 432538 13023428 ~ 13139236 (+) False G2967
XM_043236969.1 mRNA upstream 218281 12328136 ~ 12331902 (+) True LOC122342830
XM_043247831.1 mRNA upstream 227725 12318615 ~ 12322458 (+) False LOC122351007
XM_043247841.1 mRNA upstream 227725 12318615 ~ 12322458 (+) False LOC122351007
XM_043247824.1 mRNA upstream 228387 12318615 ~ 12321796 (+) True LOC122351007
XM_043249218.1 mRNA upstream 237668 12310519 ~ 12312515 (+) True med28
XM_043243521.1 mRNA downstream 53789 12644679 ~ 12658507 (+) True kdm4c
XM_043243528.1 mRNA downstream 53789 12644679 ~ 12658507 (+) False kdm4c
XM_043243544.1 mRNA downstream 53789 12644679 ~ 12657017 (+) False kdm4c
XM_043243573.1 mRNA downstream 53789 12644679 ~ 12648140 (+) False kdm4c
XM_043243533.1 mRNA downstream 55226 12646116 ~ 12658507 (+) False kdm4c
TU3862 other upstream 710017 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 1239719 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 1568827 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 53789 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 53789 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 95355 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 122642 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 612363 13203253 ~ 13205688 (+) False rhoh

Expression Profile