G2967


Basic Information

Item Value
gene id G2967
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13023428 ~ 13155797 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4275
tttttttttttttttttttttttttttttttttttttttttttTATGGTTGAAAAATGGAGTTGGTCTTTATTGACAGATTTTACAGAGACTAATTTAGTCCTCTTGCTGTTCCACCACTGTGCCCTTCTCGCTGACATAGATACCATCCAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGAGCAGCTGAtgggaagaaagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga
>TU4276
tttttttttttttttttttttcttttttttttttttttttttttGTATGGTTGAAAAATGGAGTTGGTCTTTATTGACAGATTTTACAGAGACTAATTTAGTCCTCTTGCTGTTCCACCACTGTGCCCTTCTCGCTGACATAGATACCATCCAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGAGCAGCTGGTGTTCTCTACGACTCCGGATCCACTACAGTGCCCTTCTCTGAGACGTAAATACCATCCAGGAACTTTCTGATATCCTTATTTTTCACTGTGGTTGCCTGCTGGATGAGGGCAGCTGA
>TU4279
tttttttttttttttttttttttttttttttttttttttttttTGGTTGAAAAATGGAGTTGGTCTTTATTGACAGATTTTACAGAGACTAATTTAGTCCTCTTGCTGTTCCACCACTGTGCCCTTCTCGCTGACATAGATACCATCCAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGAGCAGCTGAtgggaagaaagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga
>TU4280
tttttttttttttttttttttttttttttttttttttttttttGTgctattattcatatttatttgtagtaaacaAAAGTGCATAGATCAAGCCCTTTCTCACAGAGCAGTTTCATTATAACAGTGTACATAGACAGACTTTTCATGCCCTGAAAtccacaccaccaccaccacaaccGATCCATCCAGAAATCCTTAGTCCAGCTAATTGCACCAAATAAGACATTCTAACATTCTCACAGAACTTAAAAGACAGGAAGTTTGAGTAAGCTACACCAAACTTGAAATGGGGCACATTTACATCCTCTCTTTGGTGCTTTTCTGGAGCTTTGCATTCTGTACACAACTGTAAAAGGTGCCACAACCAAAGTGCTACTATTAGTCAATTCGCCCTTAATTCCCAAGTACCCAATTTTTCTTATCAATTTTAAAGATTACATTGCTTTCAGACTTTCATCACTGACATTTGACAGTTACCCATACTATTTGACCAACTGTTTAAGTATAGCTACATAATGATTCCTgagcaaatgcaaaaaagaaaagtcttaAGAGCGGCATTCAAGTGGCTATGCTAGCAACAAAAATCTAGTGATTTTTGTACATAAAGGGTAAATAGAAAGCCTTCAGGGTGGAGAGGTCTGCTTTTAATCAGCCACCTCTCTGTGGTCAACAGATCCCAGAACATGACAACATCCACACAGCCATGACGTCAAAACTGGAATACGCACATTTCATTCTTTCCTCttatactactttttttttctactggtCTCTACTGGAAATGGTCTTGGTCaatcttaaatcattttaattgcatctgTCTTTAGAATGACTCATTCTCATCATGACATCATGTCTGTGAAGTCATCACAGCTTTGGAATGTACTGGTCTCCAAAGGACAAGAAACATTATCCTTTTTACTTCAGTCTACTCAAAACCAACCCAAATCTTTTGACAACACCCAATTTCTAGATCacaattcatattcatatgatCTAGGACAAATGTCATTATATAGGCCTATATGTGATTTTACCAATTGTTAAATACCTaataatgctttataataaaataaaataaaatatatataagtatataataagatatatatatatatatagatatataaatccGGGAAACTTTAGACTCCAACAATTCAGCATTTTCAGCGTCACCCTCCCCTTCATCGGACTAAAGTCTCTGGAATCTGAAACACTGATAGATGATTAAGGAAACTAACAAGTTATATTAGTCACAGTAGTTGATCAGGTGGAAGATGGATTAAAAGATCAAatcttttgtggtggaaaaaGCTCTAGTCCACAGGAGGTGCTGGTGGCTCTCTGCCGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4275 False 303 lncRNA 0.40 3 13023428 13137686
TU4276 False 328 lncRNA 0.41 4 13023428 13139236
TU4279 False 301 lncRNA 0.40 3 13023428 13137686
TU4280 True 1356 lncRNA 0.35 3 13023428 13155797

Neighbor

gene id symbol gene type direction distance location
gtf2e2 gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408 coding upstream 45758 12966765 ~ 12977670 (+)
zmynd10 zmynd10,LOC107702405 coding upstream 118139 12899626 ~ 12905289 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding upstream 135774 12881119 ~ 12887654 (+)
pax5 pax5,LOC107702396 coding upstream 432538 12549928 ~ 12590890 (+)
LOC122342830 NA coding upstream 691526 12328136 ~ 12331902 (+)
ube2kb ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303 coding downstream 6026 13161823 ~ 13167599 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding downstream 34868 13190665 ~ 13201536 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 54797 13210594 ~ 13216696 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding downstream 234305 13390102 ~ 13398726 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding downstream 267235 13423032 ~ 13434220 (+)
G2948 NA non-coding upstream 85958 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 149759 12794867 ~ 12873669 (+)
LOC122348548 NA non-coding upstream 164077 12854762 ~ 12859351 (+)
G2847 NA non-coding upstream 525559 12497641 ~ 12497869 (+)
G2821 NA non-coding upstream 583320 12439732 ~ 12440108 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding downstream 14290 13170087 ~ 13171933 (+)
LOC122348541 NA non-coding downstream 138320 13294117 ~ 13295055 (+)
LOC122334852 NA non-coding downstream 141075 13296872 ~ 13300061 (+)
G3077 NA non-coding downstream 144322 13300119 ~ 13305686 (+)
LOC122350991 NA non-coding downstream 146204 13302001 ~ 13310359 (+)
dnah6 dnah6,LOC106610484 other upstream 298970 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 364921 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1179368 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1240358 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 1298528 11711940 ~ 11724900 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 47262 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 360411 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 958634 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1324401 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1446515 14602312 ~ 14603888 (+)

Expression


Co-expression Network