ube2kb (ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303)


Basic Information

Item Value
gene id ube2kb
gene name ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13161823 ~ 13167599 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243921.1
ATGGGACTGATACTAGATCTGCATGCGTTCTGGATCTGTCAAGTGCTCTGCTTTTCTGCTGCGTAATATCACCACCTGCTTCAACAAAGAGGACAAACGCTGTGTTCTAGTGTACTGTTTGAGTTTTCCAGACTCTCATTGTGCTCGCCGGTGTTTGTACTGGAGCTCAGCGAACTGtttcaggagagagagagagagagagagagggagagagagaggtgtgaaAGTGAAGTACTATCAGTCTTTGCGGACTGGAGGCTCAAAACAgcggaagagagaaagagagagagagagtgatagaGAGAGGAATCAATCAGCCATGGCAAATATCGCTGTGCAGAGGATCAAGCGAGAGTTCAAAGAAGTGCTGAAAAGCGAAGAGACaagtaaaaatcaaataaaagtagATCTGGTGGATGAAAACTTCACAGAGTTAAAGGGAGAAATAGCAGGACCACCAGACACACCGTATGAAGgggGCAGATACCAGCTAGAAATCAAGATACCTGAGACATATCCTTTTAACCCACCCAAGGTGCGGTTTATTACTAAGATCTGGCATCCCAATATAAGTTCAGTTACTGGGGCGATATGTTTGGACATTTTAAAAGACCAGTGGGCTGCTGCTATGACTCTGCGAACAGTCCTGCTCTCACTACAGGCTCTGTTAGCTGCAGCGGAGCCAGACGATCCTCAAGACGCTGTGGTAGCCAATCAGTATAAGCAGAATCCAGAAATGTTCAAACAAACCGCTCGTCTCTGGTCTCACGTTTACGCCGGCGCTCCCGTGTCCAGTCCCGAGTACACACGCAAAATAGACAAACTCTGTGCAATGGGCTCCGACAAAAATGCAGTAATAGTAGCCTTGTCCTCAAAATCATGGGACGTGGAGACAGCGACAGAGCTGCTACTAAGCAACTGATCATCCAGTTCTGTTCATCAGGCCATGTTTTCCTCAAACCCCTCTGCATCATGACCCATTCACTCCCACCCAGCCAaccatgcacacacatgcatcagCAGTCTTGGTTTGTTCAGAATGAACGTTTGGGTAAGAGACAGCAGTTAGACGGCGAGACCTCCAAATCATCTTCTGTCTTTAACAAATGTTCACATCCCTTGTCTTGTCTCCCCCTCCTTCCCAACGTTTTCACTGTTTTTGCCTTGTGTCTACAATCACTTTCCCTCTCAAATTTAGACTCTCACTTCCCTTTTAAAGAAACCCCAAAATGACAAAGCCTCCATCACTGTCATTTCATGTGAAACCCCCCACCCACTTGCATCTGTGAGACAATGTTAGTTCATGTAAATTAGTATATTTAAGGTTGTGTACATTTAAAAGGCAAAATAGCaggaatgttatttttttttcaatctgtacaccataaaaatgttttgggataTGCTTATTTGAATGGGATATTtagcatataaaaacaaatctttgagATGAATAATACCCCTTCTACTTGATGCTCTCTTACAATGAACAAATGTGTGATTTGATTTGCTCATTTGattcttttaatgtttcttttggcTTTCCTTTGCACTAATCTGTCTGTATAGTAGTTGATATGGCCAGATGACATGGTGTTATGTGAGTGCAGACACAGTTTCACTTACCGGAcgaagttattatttttttttaacgaaaGGAAGATtgccttttttcattttccctCTTTTTGAAAAGGGGGACGATGCCGTATTGGTGGTCACAAAccctttctttttgttttgaaggCAGCTGTGGGGTTTGCAACTTGATAACGGACAGATATACATTGAGttgcctctcttttttttttttttttttttttttgaagaatgtatTATGAAATAACTTGCATTTAAGTGTAAACAttttgtacacacacagatgagaaagTGAAGACAAGAGGTTCTGGTTCTCTTAAAAAGATTGGCTTTTTTTGCAGAACAGTCACTTTAACCTGAGACACAATAATCAGTTTAATGTGAGACATTTCAGTTTGGCATCAAAGTATGTTGACGTGGAGGTTCAAAAGGGTTTCTGAGTGAGGTGGGGTGcggtttttttaaatataccaaAATTGTATTCAGATTTCCACTCACAAGCTGCAGAgataatttcatattttgcaCTTATATGATATTGCAAGCATGAATCAGACCGCTAGAGTTTTTTAGTCAACAGAGTTGCTTCGATGCAAACGGGCCAAGAGCGATTACTGCCACACAATGCTTTGTGAACCTGTTTTTACCTAGTGTTCTGTCCTTTTCTTACAGTGGTGAATTAAGTTTCTTTTCTCCCTTTGCTTCAGTTCGCTAGCATCCCCATATAACATCCGATTTCAAAATGCCCCCACTTTCACAGATAGTTGCTTTCATACACCTTTCTCATGTACATACAgccaagttttgttttttttttgggggtggaGGGGATAAAGTACTGTTCATCTCTAGAATGCACCATCGATGGCtggatttatattttgtatgaaaatcaaaaacgagacaaaaaacaaaaagactgtcTTCCTGTAGTGATCACCTTGTTCAATATTGCACGAAGAAGTGAATTAAAGGACAAAAACTTCTGTCAAAGGAGAAATGCA

Function

symbol description
ube2kb Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be active in nucleus. Is expressed in lens. Orthologous to human UBE2K (ubiquitin conjugating enzyme E2 K).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 K isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243921.1 True 2603 mRNA 0.41 7 13161823 13167599

Neighbor

gene id symbol gene type direction distance location
lias lias coding upstream 14454 13141579 ~ 13147369 (+)
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding upstream 38088 13085849 ~ 13123735 (+)
gtf2e2 gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408 coding upstream 184153 12966765 ~ 12977670 (+)
zmynd10 zmynd10,LOC107702405 coding upstream 256534 12899626 ~ 12905289 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding upstream 274169 12881119 ~ 12887654 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding downstream 23066 13190665 ~ 13201536 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 42995 13210594 ~ 13216696 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding downstream 222503 13390102 ~ 13398726 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding downstream 255433 13423032 ~ 13434220 (+)
mab21l2 mab21l2,LOC107700304 coding downstream 489255 13656854 ~ 13659110 (+)
G2967 NA non-coding upstream 6026 13023428 ~ 13155797 (+)
G2981 NA non-coding upstream 37228 13123872 ~ 13124595 (+)
G2948 NA non-coding upstream 224353 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 288154 12794867 ~ 12873669 (+)
LOC122348548 NA non-coding upstream 302472 12854762 ~ 12859351 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding downstream 2488 13170087 ~ 13171933 (+)
LOC122348541 NA non-coding downstream 126518 13294117 ~ 13295055 (+)
LOC122334852 NA non-coding downstream 129273 13296872 ~ 13300061 (+)
G3077 NA non-coding downstream 132520 13300119 ~ 13305686 (+)
LOC122350991 NA non-coding downstream 134402 13302001 ~ 13310359 (+)
dnah6 dnah6,LOC106610484 other upstream 437365 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 503316 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1317763 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1378753 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 1436923 11711940 ~ 11724900 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 35460 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 348609 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 946832 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1312599 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1434713 14602312 ~ 14603888 (+)

Expression


Co-expression Network