lias (lias)


Basic Information

Item Value
gene id lias
gene name lias
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13141579 ~ 13147369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243868.1
ACATGCAGTGTGAGTTAATCGATGTCAGAGCGATTGTTGTCAATGACAGGCTCAAGCAGGATCTAAAGTCATGGCGTTAATCAGTAGAAGTTGCGGCGCTGCGGTTCGATATTCGTCTAATCCTTTGTTTTTGCCATCAAAATGCTTTGAGGGGTCTAATGTTTACTGTAGCAGACTGACCACTGCTGCCAACACATCCTCAACACTCactgagaggaagagagacatgAAAGACGACGGCCTGAACCTGCAGGACTTCATATCTGGAGAGCTGTCCGAAAAGAGCAAGTGGGAGGAATACAGAGGCAGCCTGAAGAGACAGAAGGGAGAAAGGCTAAGGTTACCACCATGGCTGAAAACAGAGATTCCTATAGGAAAGAACTACAACAAGCTGAAGAACACGCTCAGAGAACTGAACCTGCACACAGTCTGCGAGGAGGCCCGGTGTCCCAATATCGGGGAATGCTGGGGGGGAGGAGAGTATGCCACTGCCACAGCCACCATCATGCTGATGGGGGACACATGCACACGTGGCTGTCGGTTTTGTTCAGTTAAAACAGCGAGACGCCCTCCACCCCTGGACCCCGAGGAGCCATATAACACAGCTAAAGCCATCGCAGCATGGGGTCTGGACTATGTTGTACTCACATCAGTGGACAGAGATGACATTCCTGATGGTGGGGCTGAACACTTTGCACAGACTGTATCCAACCTGAAAGAAAGGACCCCTAAAATCCTGGTGGAGTGTTTGACTCCTGATTTTCGGGGCGATCTGACAGCGGTGGAGAAAATTGCTTTGTCTGGGCTTGATGTTTATGCTCACAATGTAGAGACTGTCAGAGATTTACAGAGGCATGTGCGTGACCCCCGTGCAAACTTCGACCAATCACTGAGTGTTTTACGACATGCTAAAAAGGTGAAACCCAGTGTGCTCACGAAGACGTCCATCATGTTAGGGCTCGGAGAGACAGATGCTCAGATACACGCAGCTCTGAAAGAATTGAGGGACTCTGGAGTGGACTGTCTAACACTGGGGCAGTACATGCAGCCAACCAAACGCCATCTAAAGGTGGAAGAGTATGTTACTCCTGAAAAGTTTGCTTACTGGGAGCAGGTTGGCCAGGAGATGGGCTTCGTCTACACAGCCAGTGGGCCACTTGTGCGCTCATCTTACAAAGCAGgggAATTCTTTTTGAAGAATCTGCTGGAAAAGCGGAGGACTGAAGAAGCTACAGTGGCAGCGGAGTAAAGCtagtagtattattaataacatgGTTCATACAAAAATTCTGTAATAACTTACTCttcctcattttatttttaattataacattatatattatgccagaattttcattttttagtgaAGTGTCCCCGTAAGTATGCATAATTCAAAATTATGTTGCGGTAACTTGTAATATCGTTTTACAAATGGATCAAAGATCTGTACACTGTGCATGATTTAagtaatatcaataaaatatattcagttcAAACTTGTCAAAGA

Function

symbol description
lias Predicted to enable lipoate synthase activity. Predicted to be involved in lipoate biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human LIAS (lipoic acid synthetase).

NR:

description
PREDICTED: lipoyl synthase, mitochondrial

GO:

id name namespace
GO:0009107 lipoate biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016992 lipoate synthase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K03644 lipA, LIAS, LIP1, LIP5; lipoyl synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243868.1 True 1507 mRNA 0.46 11 13141579 13147369

Neighbor

gene id symbol gene type direction distance location
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding upstream 17844 13085849 ~ 13123735 (+)
gtf2e2 gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408 coding upstream 163909 12966765 ~ 12977670 (+)
zmynd10 zmynd10,LOC107702405 coding upstream 236290 12899626 ~ 12905289 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding upstream 253925 12881119 ~ 12887654 (+)
pax5 pax5,LOC107702396 coding upstream 550689 12549928 ~ 12590890 (+)
ube2kb ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303 coding downstream 14454 13161823 ~ 13167599 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding downstream 43296 13190665 ~ 13201536 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 63225 13210594 ~ 13216696 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding downstream 242733 13390102 ~ 13398726 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding downstream 275663 13423032 ~ 13434220 (+)
G2981 NA non-coding upstream 16984 13123872 ~ 13124595 (+)
G2948 NA non-coding upstream 204109 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 267910 12794867 ~ 12873669 (+)
LOC122348548 NA non-coding upstream 282228 12854762 ~ 12859351 (+)
G2847 NA non-coding upstream 643710 12497641 ~ 12497869 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding downstream 22718 13170087 ~ 13171933 (+)
LOC122348541 NA non-coding downstream 146748 13294117 ~ 13295055 (+)
LOC122334852 NA non-coding downstream 149503 13296872 ~ 13300061 (+)
G3077 NA non-coding downstream 152750 13300119 ~ 13305686 (+)
LOC122350991 NA non-coding downstream 154632 13302001 ~ 13310359 (+)
dnah6 dnah6,LOC106610484 other upstream 417121 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 483072 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1297519 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1358509 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 1416679 11711940 ~ 11724900 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 55690 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 368839 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 967062 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1332829 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1454943 14602312 ~ 14603888 (+)

Expression


Co-expression Network