med28 (med28,LOC107702388,LOC107656902)


Basic Information

Item Value
gene id med28
gene name med28,LOC107702388,LOC107656902
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12310519 ~ 12312515 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249218.1
GAAGAAGACGTGTTGTTGTTAGTGGAAAAATGGCGTCGTCCATGGGCGGTATGTTCCCCGGTCAGCAGCCTCCTGGGTCTCATCCACCTACGGGTCCTGGGGGCCCAGGTCAGCCAGGACTTCTCACGGGTCCTCCTGGGAACAGAGGGGCAAACAACACTTTAGTAGATGAGCTGGAAGCTTCTTTCGAGGCGTGTTTTGCATCACTTGTCAGTCAAGACTATGTGAATGGAACAGACCAGGAAGAAATTAGGACTGGGGTTGACCAGTGTATACAGAAGTTTCTGGATGTAGCCAGACAGACTGAATGTTTCTTCCTTCAGAAAAGACTGCAGCTATCGGTACAGAAACCTGAACAAGTGGAAAAAGAGGACGCATCAGAATTGAAGAATGAACTCCAGAGGAAAGAAATGCTGATTCAGAAACATCTCACCAAGATCCATCATTGGCAGCAGGTGTTGGAAGACATCAACGTCCAGCATAAGAAGCCCACAGAACTGCCTCAGGGTCCACTGGCCTTCCTGGAACAGGCCTCAGCCAACATTCCTGCACCCATGAAACCAAACTAAACCATGTCCAGAGATTCAGAACCCTGTCCAGACTGTGTTTCAGGGGCCACACTCGCTCTCTGCGCAAATCAAATTGTGCAAGAAGCCTTTGTTGTGGACTCTGTTAGTGATATTTTTGTCATCCGTGGTGTTTCCAAAGGTGCTAAAGGATGTTATTGTCTCTCCTCTCATGAGGATCTTGTAGGTCTGCTAGAAGGTCATTCTGATGAACTCGAGGGTCTCTGACATTTAATCATGAGCCTACTCAAAACTGAATTTGCTATAAAATTGATGGcaagttaattacatttttaatataacaagcACAGATGTTTGTACCACAAAGCTAAAATGACCACAAAGAGCTTTAGTTGGAGAGAATTGAGATACTTTTCCCcccattgtttttattttattaaaatatcttttgtaaagtttaaaatgaagcatgtttttttctttactgaaAATTTTACATTACATCTTACACTGTATTTTCTCCCTTCATAACATGCTGTATCAATATAAGCAACGTTTTTCAGTTCACA

Function

symbol description
med28 Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED28 (mediator complex subunit 28).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 28

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15141 MED28; mediator of RNA polymerase II transcription subunit 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249218.1 True 1096 mRNA 0.43 4 12310519 12312515

Neighbor

gene id symbol gene type direction distance location
spock3 spock3,LOC107702382 coding upstream 153941 12130310 ~ 12156578 (+)
prss12 prss12,LOC107551563,LOC107656290,LOC107754187,LOC107750419,LOC107591549,LOC107702379 coding upstream 352363 11927441 ~ 11958156 (+)
apbb2b apbb2,apbb2b,LOC107656070,LOC107551575 coding upstream 400505 11867305 ~ 11910014 (+)
uba6 si:dkey-82j4.2,LOC107656020,LOC107551577,LOC107702375,LOC107591547 coding upstream 445381 11852225 ~ 11865138 (+)
fnip2 si:ch211-42i9.8,LOC107754161,LOC107656063,LOC107750416,LOC107702372,LOC107591544 coding upstream 474817 11819256 ~ 11835702 (+)
LOC122351007 NA coding downstream 6100 12318615 ~ 12322458 (+)
LOC122342830 NA coding downstream 15621 12328136 ~ 12331902 (+)
pax5 pax5,LOC107702396 coding downstream 237413 12549928 ~ 12590890 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding downstream 568604 12881119 ~ 12887654 (+)
zmynd10 zmynd10,LOC107702405 coding downstream 587111 12899626 ~ 12905289 (+)
G2782 NA non-coding upstream 20053 12290122 ~ 12290466 (+)
G2767 LOC107548350,LOC107745058 non-coding upstream 59741 12248498 ~ 12250778 (+)
G2711 NA non-coding upstream 388154 11920739 ~ 11922365 (+)
G2648 NA non-coding upstream 461242 11848131 ~ 11849277 (+)
G2651 NA non-coding upstream 462507 11793561 ~ 11848012 (+)
G2790 gria2a,LOC107591557,LOC107655932,LOC107750427,LOC107548351,LOC107702389 non-coding downstream 25127 12337642 ~ 12348940 (+)
G2806 NA non-coding downstream 77597 12390112 ~ 12392194 (+)
G2791 NA non-coding downstream 80095 12392610 ~ 12395729 (+)
G2820 NA non-coding downstream 114030 12426545 ~ 12437258 (+)
G2821 NA non-coding downstream 127217 12439732 ~ 12440108 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 466459 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 527449 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 585619 11711940 ~ 11724900 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other upstream 1329163 10844956 ~ 10981356 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 1820435 10483640 ~ 10490084 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 332164 12644679 ~ 12658507 (+)
dnah6 dnah6,LOC106610484 other downstream 346747 12659262 ~ 12724458 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 890544 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 1203693 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 1801916 14114431 ~ 14118433 (+)

Expression


Co-expression Network