RNA id: TU4041


Basic Information

Item Value
RNA id TU4041
length 3100
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G2791
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12392610 ~ 12395729 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGATTAAGTTGTGTGTACTCACTGTGGCGATACAGTAGGGCAGATTGTTTTTGCAGCCGGGACAGAGCAGCTCACACTCAGGCAGGCTGAAGCCGCAGTAGGGACAGGGAGagctctcctcctccacctcagAAGTATCTGGGCGACTGAcgtgaaaaacagaaaaaagtcaaTGATTGGGTCGCGGCAAACACTTGTGCTGCGTTTGTGCAAATTCAGTCCAAATTTGTTTAGCAGTTGTTGTGGACAATGGTGGGCTCAGAAGTCAAAAAGGTCAAGAACCACTGGTTTAAACAGAACCTAAATGCACTGAAATAGCATTCtgctaaaacaaaacagacaacgTTCGCAAATAAATTACGTTATAAATTGGAGCATTTAATTCTTATTAGATGTGTTTCCTTGTGTATTACCGGACCATGGCCTCTATCTTCTTCTTGTATTTGAGATCAATCTTGTTGCGATACTCTGGTCTCATCAGCATAGAGGCAAAACTGAAGGCAGAGTTCCTTAGTCCAGCACGATGACATTCAATAACCGCTGATGTGAGGATGGGGACAATGTCTGTAggccataaacacacacacatacactgctTTATGCTACATTAAAGGTGGACCCAGTGCCTCCAAAGTTAGTTTAAAAAGGCATAATGCTCAGGGAGACCACAGAGACTATGAAGGAGATGCCTCAATATGCTGGATAAACTGCTGTTGTTCAGTGATGTCAGGGTCATTATATAATCAGCTTACAAGGCACAAGAGATCCAAGTGATCTATTATTGACTGTTAAACCAGTAAAAGAGATGCAGGATTGTCATCTCATCTTTATATAAGAAAATGTTTAGTGGATTTGACAGCCATAACAGTACTGaggtatgtactgtatatgtgtgtgtgtgtgtgtgtgtgtgggtaggTGCACAAAAGCAGCTCACGGGATGGGAATTTGCTGATGTTGTTGGAGACGCGGATAAGCATTCGTGCCCCCTTTAAATGATCTCCTCTTTTAACATGGATCTGAAAGAATATAAACATTCatgacataaatataaaatactaatattaaactGGGGcagcaaaaataatttgaacacTTAGTCGCTTAAACCaaacataaatgtatgtttGAAATATTAGATACAAGACAAGTGATGAAAAACCAACCGGTATCTAGGtgatttttttgtgaagttAGTTTCCCCTCAAGTTCACACGCGTGTCTTTGCGGAGTAGCCAGTATTTTGTCACATTAATATTAGACAACCAAAAggtttaataatactttaagaTTAACAATATGTTATAGtgtattactgaaataaatgatataaactATAGTTCAGATGTTTGGGGTTGGGaagattttttcaaaaatgtcttgTACTCACCaagtttagtttatttgataaaaaaataaaacagaataaaacagaaacactgtCAAATActtacaattacaatttaaaagaacttttCTACATCTATGTGACAATGCAAAAATCCCTACCTTCACCTTTAACATATTACAAACCTTTAAACAGTAGTAATACAACACTCGGTTTGACATTTTGTAACATAATGCAaaaattttattctatttttatgcaaataatatatgttaaaatgtgacATACAGCAAGCATGTGTTTCCCACCTTCACTAGTATGTAGCTGTGCAGGATCATCAGGTTTGTGGCCATCTCTGCTGGGATCTTAATGTGCTGTGTCTGAAGCTCAGCGTACATGCTGAACAAAACATCATGGGCATTCCTGTAGTTTCCTATagcacataacacacacacacaaacacaccggGAATTCCCTAAGAATGTATTATCTTCTTATTTTCCCACTTTGAGTCTGGATTGGCGCAACGTGCTCCTAAAAAACTACACTTAACACGATAACAGTGAATGACAATCTACAACTCTACATGGATAACCCGAAAGCACTGAAATCAGACCTGCAGATTGCTCCTCTCTGGCAATAATAATAGCAGTTCTTGCTGCCTCTCTGTACTGTTTGAGAGCCATGTACAACCGGAACAGATATTTTGCATCCTAGGAAAGAGCAGAACCAACAGACATTATCTAGTCGAAACACTTTTTCTGATAACACACTTCTGACGCTACATACTATATATGTTGCAACCAAATAAGGTAGACCACCCTATACATTTCCTCAGAATCACACTATTTTACCTAAACTGTTCAAATaactacaaaacaaacacacacatttagaattttaagtaatgaagcaatcaaaacacaaacacaatttttactttgcacacacacacacacacacacacacagaagtgcCTTCTGCTGGGTCACCACAAAGAGAAACATCAGCAAATGCAATGAGCTACTCACGGCAAGAGACTACACACATGCAGTGACACGCCAGAAAGAGAGGATGAGTGAGAGATGATGAGTGTACGGACAAAAGGAACCCATCAGATGATGAGTGCAACAACATATTTATAGTACATAATTGCAAAATTCAACCAATACTTGTTTaaatacagtcatttaaatgtttcagtgcCGATATTTTAAGAGAACCCacacatttacaaaagaaaaagtcaaactTGATAAAATCCTAAAGTAACGGGCAATGTTAGAGCTGCCTGGAGCCACTAGATAACCCttgtaatttataaaatattaaaagaaacctGGAGCACTAAGCAATGATGAACCCAGCAGGGTCATGGAACAAACAAGAAATAAGCGTTTATGGACCTCAAATTCAGATGTTGTGATCAGCTATAGCAATACAacccacatacagtatattaatatttcgtGTGGTCACATTGCACAactgttgaaatgttttaggtcagtaagatttaagGGATTTTAAGGTTCCCCTCACCATTGCTACATTACTTGAAGTGCAAACAATAATGATTTGAAGTGTTGTCTTTACTGCAGTCTTTacggtcacatgatccttaattTTTTGTGCTGCTTGACAGTTTCtgataatttttattttaggacttatttttttgtttttctgcaacAATGTAGAAGCCTTTAATCAAatgtttgatcaatttattacatcctgctaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4059 lncRNA upstream 416 12390112 ~ 12392194 (+) True G2806
TU4037 lncRNA upstream 43670 12337642 ~ 12348940 (+) True G2790
TU4039 lncRNA upstream 43670 12337642 ~ 12348940 (+) False G2790
TU4040 lncRNA upstream 43670 12337642 ~ 12348940 (+) False G2790
TU4024 lncRNA upstream 102144 12290122 ~ 12290466 (+) True G2782
TU4081 lncRNA downstream 30816 12426545 ~ 12437258 (+) True G2820
TU4082 lncRNA downstream 44003 12439732 ~ 12440108 (+) True G2821
TU4122 lncRNA downstream 101912 12497641 ~ 12497869 (+) True G2847
TU4201 lncRNA downstream 399138 12794867 ~ 12873669 (+) True G2918
XR_006251341.1 lncRNA downstream 459033 12854762 ~ 12859351 (+) True LOC122348548
XM_043236969.1 mRNA upstream 60708 12328136 ~ 12331902 (+) True LOC122342830
XM_043247831.1 mRNA upstream 70152 12318615 ~ 12322458 (+) False LOC122351007
XM_043247841.1 mRNA upstream 70152 12318615 ~ 12322458 (+) False LOC122351007
XM_043247824.1 mRNA upstream 70814 12318615 ~ 12321796 (+) True LOC122351007
XM_043249218.1 mRNA upstream 80095 12310519 ~ 12312515 (+) True med28
XM_043243829.1 mRNA downstream 154199 12549928 ~ 12590890 (+) False pax5
XM_043243855.1 mRNA downstream 154199 12549928 ~ 12590890 (+) False pax5
XM_043243846.1 mRNA downstream 154454 12550183 ~ 12590890 (+) False pax5
XM_043243837.1 mRNA downstream 157164 12552893 ~ 12590890 (+) True pax5
XM_043243521.1 mRNA downstream 248950 12644679 ~ 12658507 (+) True kdm4c
TU3862 other upstream 552444 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 1082146 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 1411254 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 248950 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 248950 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 290516 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 317803 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 807524 13203253 ~ 13205688 (+) False rhoh

Expression Profile