RNA id: TU3945


Basic Information

Item Value
RNA id TU3945
length 1627
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G2711
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11920739 ~ 11922365 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAGACCACCATAAAATATCAACATAACCTCTTTagacattaaacattattagATGTTTCCCTTTATACAAAACACAGTAGCACCTAACTTTAATATTTACTGAGAAGCATGCTCAATTCAAACCTCAGAACTGCTGAAGTttcctcaaaaaataaaaagaaagaagaaagaaatgaagaaaacataTCTTTTGGTTTCATGAGTGAAAGGTTCTCGTTATTTTCTATATAACACTGAAGCACaactttataaatgaaatatacacaatatttgtaattatcaCCTTCATTTTGAGCCATaatttaaagccattttttacattgtaaaatcatttagacttttttgagataattttaatcataaactcaTAATCATAATGGCAAAAAATGGCTTAATGAAAATGTAGCTAGCTATGAAAGGAAACATTGGAATCTAACAATGCCTTGGAAAAaagttcttacatttttaaatcaatctttTAAAAGAGCATAGGAAATAAAAGTGTGAAATACTTCTGAAATACTGGTGTCCTATATTTTAGAACAGTCAGGTTTGTGacatattttggtttttagttttttattatagttttttttattatttagttatttatttatatagaaaatcTGTAGCCTAAAGCTTTCCAATATGTTACTATTTGGTTTTATGATTTCAGAGGCGTATCGTGTTGCCACGTTATTACTGGAACAAGACAGGAGAAGCCATCACACAGTCTCTGATACTTTATTACCTACATATAATCCAAAGGTTGAGTAAAAAAGCTTCTCTTTCTAATAAGTAACATGATTTGATGTCTCTCTCATCTCTGCCAAAAATGGTATGATACAAAATAGAACACTAagtttaaacaagaaaaaaactcaaGAACAAATTGCATTATGACTGCTGAAtacaaaagctaatttaaatcTTCTAATGCACACTGTAACAACAGTTATGGCAAACATGTACTTGATATTCATGAGCTAATTACATCAGAACATGAAACTGACCCATTTTTCTTTTGCCCTAGATGATGCTGTTACATTAATGCAAACTGGAAAATCCCACGCTGTGTGTAATGTAATACCAGACCAGAAAACACCACTAAATCTTAGATAACTGGTTATTGCATGACTAGTTAATGAACtgtgtaacactttagaatagggaacacatTCAATATTAATTAGGACTTTTCCCTAAATAAAATCCtagtttgctgcttattaataatcaCTGAGGTAGTTAAGTTTAaatattgggtaggattagggatgtaaaataaggcaattacatgtttaattgcttctaataaatggctaatattataataatatgcatgctaataagcgactagttaagagacccttaaataaagtgttatcaaaaaccccaaaataaatgcataacaaTATTCTGCTGTTGCTGTTTGTGAAGGTATGATCTTACTTTAGTGAGAtttgaaagtaattttaaaGCATGTAAAATCATGTGCTGTTAACTCGCAGTGTCTCTCTACAAAATTTGATCTGAATCACTGAACTCATTTAGCAATTCAGCTCTGAATTATGTTATTGTTCATTATAGCAgcccaaaaataaaagaaaatagtaaGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3851 lncRNA upstream 71462 11848131 ~ 11849277 (+) True G2648
TU3864 lncRNA upstream 72727 11793561 ~ 11848012 (+) True G2651
TU3842 lncRNA upstream 137704 11773971 ~ 11783035 (+) False tmem192
TU3840 lncRNA upstream 150154 11769443 ~ 11770585 (+) True G2645
TU3816 lncRNA upstream 157405 11744876 ~ 11763334 (+) False G2625
TU4009 lncRNA downstream 326133 12248498 ~ 12250778 (+) True G2767
TU4024 lncRNA downstream 367757 12290122 ~ 12290466 (+) True G2782
TU4037 lncRNA downstream 415277 12337642 ~ 12348940 (+) True G2790
TU4039 lncRNA downstream 415277 12337642 ~ 12348940 (+) False G2790
TU4040 lncRNA downstream 415277 12337642 ~ 12348940 (+) False G2790
XM_043234807.1 mRNA upstream 10725 11867305 ~ 11910014 (+) True apbb2b
XM_043234823.1 mRNA upstream 10725 11867305 ~ 11910014 (+) False apbb2b
XM_043234833.1 mRNA upstream 10725 11867305 ~ 11910014 (+) False apbb2b
XM_043234841.1 mRNA upstream 10725 11867305 ~ 11910014 (+) False apbb2b
XM_043234846.1 mRNA upstream 10725 11867305 ~ 11910014 (+) False apbb2b
XM_043237186.1 mRNA downstream 5076 11927441 ~ 11958156 (+) True prss12
XM_043236192.1 mRNA downstream 207945 12130310 ~ 12156578 (+) True spock3
XM_043236206.1 mRNA downstream 207945 12130310 ~ 12156578 (+) False spock3
XM_043236232.1 mRNA downstream 208043 12130408 ~ 12156578 (+) False spock3
XM_043236185.1 mRNA downstream 208101 12130466 ~ 12156578 (+) False spock3
TU3862 other upstream 80573 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 610275 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 939383 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 722314 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 722314 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 763880 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 791167 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 1280888 13203253 ~ 13205688 (+) False rhoh

Expression Profile