RNA id: TU3864


Basic Information

Item Value
RNA id TU3864
length 1617
lncRNA type read_through
GC content 0.32
exon number 2
gene id G2651
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11793561 ~ 11848012 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTTTTTGTGCAAAATGACTTAAAGAAGACAAATTACATGCTAGTTGTCCTACAACACAATGGTGTGAACTGCTATGCTTCAGGACACAGCAACATATGATTTCTAGATCCTAACTAttatctgtatataaatataataataattattattatattatgtgtataaatacaaacacatgcatgtatatatttaagaaaaaaaatgtttatatattaaatatatttgaagagttgcagtttgcaaaaacagatcacttttattgtgaatttcaattaaactgcattgggttattttgattaggtaaaaaaacccaataattattacacaataaaaacataataacataataaaaccccccaaaatctttgtgtttacatatacagtaaatgtatatgcagctttattaaattaatacatacgtttatagaagaaaaaaatattaacattattaagaTAAAGCCACCATTTTCTATTCTTGttcaaatgtattcatatatatttatgtaaactggacgatattcatatttatgtaaaaaaataaataaaatacattctaaaaatgcattatgtaaatattgcaacattatgatataaataaattgtatttgtaggtaaaaaatattttcactgtaAACATTCAGCAATTTCATTGCCAAAGGCCACCCCCACCCGGAGACTTTAGAAGCAGTTTGCCCACCCAAGCATAAACTGGCATGCATCCAAGCCAATCAGAGACAGCTGGCCTTGAGGGTCAACTAAAAGATGAGCTTAACAGCAAGTCCATTTTCAGCGTGAGAGATGTTCACGCACTCGATAGCTGCATTTGGTGAGCCAGGCCTTTTAATTCCAGCACCAACAGAACGACTctgtatttatatgaaatgtaattgTTTGCGTGTTCACGGTAGCTCTTGACTGGTTTTGGTGAAAACTCGCTGTTTCTTCTTCGAGTTACTCTTTTGTTGCATTATCTTCTGCTCCGTCTGAACGTAGTTATCTGCGGGTCACACGCATACGgacagttttgttttagtcattactccagtgtttGGGTGGGTGgataaaaagtgtatttaccTTGATGATCTGtattgtgtgtgtaaacagcAGCCAGGCCGAATAAGCACATAATAGTGAAAGCAATGATGATGAAGACCAGCTCAAAACCTGAAAACAACAGATccataacaaacacacagaattccacctctacacacacacacacacacacacacacacacacacatatgcccAGTATCAAATGCTTAATTTCGAGCTCTCTTTGCTGCAAAACAGAAGCAGAACAGCTCTACTAATGAACATTGTGGAGCTCAGTTTCATAAACCTCAGCTtagcaaatttagtttttattcgaGCCAAAGTAACAAAAATGCTCCTAAAACCAAGCACTGGAATacatgatttttatattgcctTTTTAAGTTGTTAACATTGCTTATCATGAACTGCCAGTAAACGTTAATGTATTAAAGATGTAGTAAGaagcattgttattatttaaaatggtttttgttaataagaataaaatgtaaaaaaaaaaactatataacttgaagaattttgaattttagttcaaaattaaataattttgaac

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3842 lncRNA upstream 10526 11773971 ~ 11783035 (+) False tmem192
TU3840 lncRNA upstream 22976 11769443 ~ 11770585 (+) True G2645
TU3816 lncRNA upstream 30227 11744876 ~ 11763334 (+) False G2625
TU3815 lncRNA upstream 36274 11744876 ~ 11757287 (+) True G2625
TU3813 lncRNA upstream 47600 11738984 ~ 11745961 (+) True G2623
TU3851 lncRNA downstream 119 11848131 ~ 11849277 (+) True G2648
TU3945 lncRNA downstream 72727 11920739 ~ 11922365 (+) True G2711
TU4009 lncRNA downstream 400486 12248498 ~ 12250778 (+) True G2767
TU4024 lncRNA downstream 442110 12290122 ~ 12290466 (+) True G2782
TU4037 lncRNA downstream 489630 12337642 ~ 12348940 (+) True G2790
XM_043239864.1 mRNA upstream 10491 11773956 ~ 11783070 (+) True tmem192
XM_043236914.1 mRNA upstream 25134 11765438 ~ 11768427 (+) True LOC122342793
XM_043239840.1 mRNA upstream 39145 11753508 ~ 11754416 (+) True LOC122345576
XM_043236902.1 mRNA upstream 45212 11747417 ~ 11748349 (+) True LOC122342786
XM_043236877.1 mRNA upstream 55357 11735379 ~ 11738204 (+) True LOC122342774
XM_043246999.1 mRNA downstream 4213 11852225 ~ 11865138 (+) True uba6
XM_043234807.1 mRNA downstream 19293 11867305 ~ 11910014 (+) True apbb2b
XM_043234823.1 mRNA downstream 19293 11867305 ~ 11910014 (+) False apbb2b
XM_043234833.1 mRNA downstream 19293 11867305 ~ 11910014 (+) False apbb2b
XM_043234841.1 mRNA downstream 19293 11867305 ~ 11910014 (+) False apbb2b
unassigned_transcript_4 other upstream 483097 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 812205 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other upstream 812205 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other upstream 812205 10915176 ~ 10981356 (+) False LOC122347856
XR_006251248.1 other upstream 1304450 10483640 ~ 10489111 (+) False tlr3
XR_006251287.1 other downstream 796667 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 796667 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 838233 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 865520 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 1355241 13203253 ~ 13205688 (+) False rhoh

Expression Profile