XLOC_000250


Basic Information

Item Value
gene id XLOC_000250
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19808441 ~ 19821195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000412
agtaGGGAGCGAGACGCGCCTGGGCAGCTGATTCTGCCTCCCGTGACTGTCTCTATTGTAGTCTACTTCACAGGCCAATACCTCTCATAACTATCATGGGCAGATGTTGTACGGATATCTGGATTATATTGGAGAATAAACCCCGAATTCTGTGAAGACGCATGAAATAAAATAGTCATGGATTTCCCGGGGCACTTTGAGCAGATTTTCCAGCAGCTGAACTTCCAGCGGCTGCATGGACAGCTGTGTGACTGCGTGATCATGGTTGGCAGCCGTCATTTCAAGGCCCACCGCGCTGTGCTGTCTGCCTGCAGTACGCATTTCCGAGCCCTGTTTACTGCGGCTGAGGGAGATGCCAGCACAAGAATGATCCACCTGGACTCTGAGGTGGTGACCGCTGAAGCGTTTGCTGCTCTCATGGATATGATGTACACATCCACACTGATGCTGGGAGAGAGTAACGTGATGGATGTATTGTTGGCTGCTTCTCATCTGCATCTAAATGCTGTGGTGAAAGCCTGTAAGCACTACCTGACAACGCGCACTTTACCCATGTCTCCACCTGGAGATCGTGGCAGTCAACATCACACTGAGCAACAGCAAGCGGCGGCGGCTGCCAACTCTCATCTTCAGCGATCATTTCTGCTCCAGCAGCTCGGCTTGAGCTTGGTTAGTTCTGCCTTGAGTGGGGCTGAAGATGGGGGAACGGGGACGCAGCGGAGAACGGGTGCGGTGTGCGGAAATGGATTGGGGGATCAGCATGGTTCTCACCCAACACGCCGTTTCTTAAAACGCAAGCAGCCCTTACCCCTGATTACTTCAGAAAGGGGAAGGCCACGGCTTTCCTCACAGGTGGAGGGCATCGTGGGGGAGTCAGGGGGCCGAGATGGAGGAGAGGAGCTTCTGTCTCCAGATTCACACAGTAAAATGGTGGACGAAGTGGTCACTGGCGTTATTCCCATGGATGATGGAGGTTTACTGGAGCAGGATGAATATCGAAGGGGACTGACCCATGAGGACATGCAGCTCCCGAGCCAGTCAGATGGAGGAAGGGGAACAGGAGCAGAAAAAGCATTGCTGCTGCCGCGAAAAGAGGAGTACCCAGATGCAGGTCGTCACCATGATGAGGGGATGAAGATAAAGAATGGAGATGAGGAGGAAGAGCAACAGCACATGCAGGTCGTGGTGAAGAGCGAGCCACTGAGTTCACCCGAGGCGGTGGATGAGACTAGCGATGTTACCTCACAGGCAGAAGGCAGTGATCAGGTGGAGCCAGTTGGAGAAAAACTGGAGCTCAGTCCAGAGTGCAGTGAGCGCAGCTACTCTGATCCGCAGCCCAGCTCTGAGCTGCTGATCAAAGGAAACAAGGGATTAGGAGCTGCAGAAGACAGAAGAGGAGAGACGCTATCCTGCAGTGAAGCTCTTGAGTCCTCCTCTGGATTACACATCACCAGTTTCCTCAGCACTAAGGCCTTTATTGGCAGAGGGGTGTCTTCAAACCATGCCAGTAGTGTTGACAGTGTTCCCAACACCACAACTGGAGAATTTCAAGCAGACCACGATTCCGCTCGCTTCTTCCTCCCGAATGATTCCATCAACGCTGCATCTTCCTCTCTGCACCTCCTTTCAGGAGAGACCCAGGTCTGCTCTGACATGCAGCCAGAGTCCCTTCTCATGCGCCCGCTGCATGATGGAATAGCAACTTCCTCCTCATTAGGGACGTCCCGTGGTGGATCGGTAGATCAGCTTGCTCTTGAGTTTCAGCGCAACATTTTGGGATTACAAACATTCCCTCATTCGTCCAGAGGTGGAGGTGGTGGTGGAGGGTGCCAATCATACCGGCGCATCGCTCCTAAAGCTCATCCAGGAGGGGCTTCAATGCTAATGGACGGCCCTCAGCAACATGACGCTgcttcctcgtcctcttcctccACAATGCTACTCAATGGAGTCAACTTTGAGAATTCTGTCCCCATAGTTCAAAACAGTGGCAACTCCAACTTGAACCCTCTTCCCCAGTTGACCAGAGCCTCAGCAGATGTCCTGAGTAAGTGTAAAAAGGCGCTTTCTGAGCACAACGTGTTAGTGGTGGAAGGTGCCAGAAAGTACGCCTGCAAGATCTGCTGTAAGACCTTCCTCACTCTGACGGACTGCAAGAAACACATCCGGGTTCACACCGGCGAGCGTCCGTATGCCTGCCTGAAGTGTGGCAAGCGCTTTAGTCAGTCCAGTCACCTGTACAAGCACTCCAAAACAACCTGCTTACGGTGGCAGAACAGTGATATGTCTAATGCCATGCTCTAATTCAGCCACTCAAAATATGCCACGCACTGGCGACTGGCCACCGGTCAGCTTCTGACTGTTCTTACACTGTCACACCTACTATTGTGGTGGCAGCGGTATCTTTTTTTTGGTTTTACTAGTATAGTATGTTGTTAACATGCTTTCAGTTAACATGCCATTGATGGTACACATAAAAGAGATGGTTCTCCTTAATATGTAGCTTCAAACCTGTATGGCTGACTCAgatttgtttgtaatattttacatttaacaaaacaGTTTAATCGTAAAAACACCAACTTTAGTTTCACGCAGAGGTCTGGTCATATTTTGTCCATAAGCCACATTAATATTCAAAGGACAGTTCACCACAgactgaaaattctgttatcatttactcaccaccAAAAGAGATATGAAGAAAGCTGTAAgctggaaaccattgacttccacagtatttatttgtctactatggaagtcaaagattaccggttttcagcattcttaaaaaaagaaaaactactttaaaaaaagaaactcataaaggtttggaaccatgtgaaggtgagtacattttcatttttgggtgaaccctcactttaataactacttttaagTTTGTATATGAACATAAATAAGGGTTGCATACTATCAAGGAGGTGAGGAAGTGAAAACACCTTGCATGTAGATGGTGGATAGTCATTAAGCAGCCTTTCTTTTACTGGTAAAATGGTCCTATTAGGAGATTGGTCTCACACTGAAAAGTCAATTAAGCAAAATTAAGAGGTGACTAAAATATAGGTTGCGTAGAAATTATTTTAAGAATTAAGTTGAAGAAATGATTGTTTAACTGTCCGGGATCTCCAGTGAATCtccaatttttatttttctgaaatgcTGTGTACTTCGAGACTTAGAAGGTATCAGACCTTCCTCTTAAGCCTATAATTCTTAATAAGTGGGCATCATGTTTTAGATTGTTCACCTTTACTAAGTTTGCTTTGCCAAGTTCTTGAAAAACAGTGGCAGTTTCAATACTGTTGGATCCTTCTTGTGGATGTTTAATCATTTTTGTCTTTTCAGTGGGagttatatttttagttttgaaCCATTTTCACTGAATTTGAAGTGAGTTTTTACTTCCAGTCCTTGTTTACAGTGCTGCATCACTCTTAACTGACTatatataaattgaataatggttattaatatttatttgatttggaaTTGAAAAGAATTGtcttgagtaaaaaaataaatgaccgGAATATCAGCTTGAATAATATGTCTGCAGTGTAAGTCACACGGGTTTGGAATAACAtgagagtaaatgacagaattgtcatgtTTTGGTGAATTATTTCTTGTAGTTTCACTGTGAAAAGGTTTTGTTTGAATGGTCATTGAGAGTTCTGCTTCATGTGGGTCAAGAAGTGGTCAGAACTTCAGTAGCTGAATCCTACATCAGGACGATCAGAAGCTTTGCTGTTCATTTCCTCTGTGGAAGTCAGATGTTTGAGGTGTATTGTCAGTTTGAAGTGTTTTAGTTTTTGATGCATCAGAATCATTTCTAGGTGCATGTTTAGTTCTCAACAGTTCAGTGGCTCTTAAAATGACTGAAATGTATTGGGGGAACCCAAAATATTTTTGCAAGCTAACGCAGAAGCATACAATTAGGTTGCAAGttaaagtttttctttttcactGTATTTACATCACCCTGTCTAGCACTGTTTTAGCATACAGTAACACagatgttagcatgttgctaagcaaatgtaaatgcaatgttAGGTAAATAgtgttcatttatatatattttggcattattataattttatttacataatcaCCCATGTTAGAGGCATATTGTTCAGCCAAAATGtcaaattcagtttttttcagAAGAATGTTGGACATTGTTAGCCATTGTAGTGACACAAATGACCATTTTGTCACTTGAGGTGTTGTAGGGTTGTTTCTGACGCGTGAGAGCTCAACAAACGAATCATCCTCCAAATACTGcttatcagatttattttttgcacagacAGTTCTTATGGTTCAATTTCCACTCACAGTCTGATATATAAATGCTCATAAAATCACATTGAATGCCT
>TCONS_00000413
GAGACGCGCCTGGGCAGCTGATTCTGCCTCCCGTGACTGTCTCTATTGTAGTCTACTTCACAGGCCAATACCTCTCATAACTATCATGGGCAGATGTTGTACGGATATCTGGATTATATTGGAGAATAAACCCCGAATTCTGTGAAGACGCATGAAATAAAATAGTCATGGATTTCCCGGGGCACTTTGAGCAGATTTTCCAGCAGCTGAACTTCCAGCGGCTGCATGGACAGCTGTGTGACTGCGTGATCATGGTTGGCAGCCGTCATTTCAAGGCCCACCGCGCTGTGCTGTCTGCCTGCAGTACGCATTTCCGAGCCCTGTTTACTGCGGCTGAGGGAGATGCCAGCACAAGAATGATCCACCTGGACTCTGAG
>TCONS_00000414
attcggatgtacaaaagaatatgcgtgagattcatttaaaaagctgtaaatgtgcgtatgcagaaaaaaattcagatgtatgaaacactgcgtacgccgaatctcacgcatattcttttgttttagtatgatttccacgcaagtcttcgtacatgaggccccaggtcagtGTCTGATTTAATACTACATATGAAAATGGCACAAATCTGaactgaaaagatcagattcgatgcggtttgggctgttcacatGGTCATTACTTGAGTCATATGAGGGGGGAAAAATCAGATTCGGGCCACATTtggctgcagtgtgaacgtagcctaatTGTAGTCATACGCCTTTAATGACATCTATTCTATTTGTTCTCAGGTCATGGATTTCCCGGGGCACTTTGAGCAGATTTTCCAGCAGCTGAACTTCCAGCGGCTGCATGGACAGCTGTGTGACTGCGTGATCATGGTTGGCAGCCGTCATTTCAAGGCCCACCGCGCTGTGCTGTCTGCCTGCAGTACGCATTTCCGAGCCCTGTTTACTGCGGCTGAGGGAGATGCCAGCACAAGAATGATCCACCTGGACTCTGAGGTGGTGACCGCTGAAGCGTTTGCTGCTCTCATGGATATGATGTACACATCCACACTGATGCTGGGAGAGAGTAACGTGATGGATGTATTGTTGGCTGCTTCTCATCTGCATCTAAATGCTGTGGTGAAAGCCTGTAAGCACTACCTGACAACGCGCACTTTACCCATGTCTCCACCTGGAGATCGTGGCAGTCAACATCACACTGAGCAACAGCAAGCGGCGGCGGCTGCCAACTCTCATCTTCAGCGATCATTTCTGCTCCAGCAGCTCGGCTTGAGCTTGGTTAGTTCTGCCTTGAGTGGGGCTGAAGATGGGGGAACGGGGACGCAGCGGAGAACGGGTGCGGTGTGCGGAAATGGATTGGGGGATCAGCATGGTTCTCACCCAACACGCCGTTTCTTAAAACGCAAGCAGCCCTTACCCCTGATTACTTCAGAAAGGGGAAGGCCACGGCTTTCCTCACAGGTGGAGGGCATCGTGGGGGAGTCAGGGGGCCGAGATGGAGGAGAGGAGCTTCTGTCTCCAGATTCACACAGTAAAATGGTGGACGAAGTGGTCACTGGCGTTATTCCCATGGATGATGGAGGTTTACTGGAGCAGGATGAATATCGAAGGGGACTGACCCATGAGGACATGCAGCTCCCGAGCCAGTCAGATGGAGGAAGGGGAACAGGAGCAGAAAAAGCATTGCTGCTGCCGCGAAAAGAGGAGTACCCAGATGCAGGTCGTCACCATGATGAGGGGATGAAGATAAAGAATGGAGATGAGGAGGAAGAGCAACAGCACATGCAGGTCGTGGTGAAGAGCGAGCCACTGAGTTCACCCGAGGCGGTGGATGAGACTAGCGATGTTACCTCACAGGCAGAAGGCAGTGATCAGGTGGAGCCAGTTGGAGAAAAACTGGAGCTCAGTCCAGAGTGCAGTGAGCGCAGCTACTCTGATCCGCAGCCCAGCTCTGAGCTGCTGATCAAAGGAAACAAGGGATTAGGAGCTGCAGAAGACAGAAGAGGAGAGACGCTATCCTGCAGTGAAGCTCTTGAGTCCTCCTCTGGATTACACATCACCAGTTTCCTCAGCACTAAGGCCTTTATTGGCAGAGGGGTGTCTTCAAACCATGCCAGTAGTGTTGACAGTGTTCCCAACACCACAACTGGAGAATTTCAAGCAGACCACGATTCCGCTCGCTTCTTCCTCCCGAATGATTCCATCAACGCTGCATCTTCCTCTCTGCACCTCCTTTCAGGAGAGACCCAGGTCTGCTCTGACATGCAGCCAGAGTCCCTTCTCATGCGCCCGCTGCATGATGGAATAGCAACTTCCTCCTCATTAGGGACGTCCCGTGGTGGATCGGTAGATCAGCTTGCTCTTGAGTTTCAGCGCAACATTTTGGGATTACAAACATTCCCTCATTCGTCCAGAGGTGGAGGTGGTGGTGGAGGGTGCCAATCATACCGGCGCATCGCTCCTAAAGCTCATCCAGGAGGGGCTTCAATGCTAATGGACGGCCCTCAGCAACATGACGCTgcttcctcgtcctcttcctccACAATGCTACTCAATGGAGTCAACTTTGAGAATTCTGTCCCCATAGTTCAAAACAGTGGCAACTCCAACTTGAACCCTCTTCCCCAGTTGACCAGAGCCTCAGCAGATGTCCTGAGTAAGTGTAAAAAGGCGCTTTCTGAGCACAACGTGTTAGTGGTGGAAGGTGCCAGAAAGTACGCCTGCAAGATCTGCTGTAAGACCTTCCTCACTCTGACGGACTGCAAGAAACACATCCGGGTTCACACCGGCGAGCGTCCGTATGCCTGCCTGAAGTGTGGCAAGCGCTTTAGTCAGTCCAGTCACCTGTACAAGCACTCCAAAACAACCTGCTTACGGTGGCAGAACAGTGATATGTCTAATGCCATGCTCTAA

Function

GO:

id name namespace
GO:0009057 macromolecule catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0016579 protein deubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0101005 ubiquitinyl hydrolase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000079250

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000412 False 4403 lncRNA 0.44 3 19808441 19821195
TCONS_00000413 False 377 processed_transcript 0.51 2 19808451 19815449
TCONS_00000414 True 2502 processed_transcript 0.51 2 19814865 19819096

Neighbor

gene id symbol gene type direction distance location
XLOC_000249 FNIP2 coding upstream 5839 19764995 ~ 19802602 (+)
XLOC_000248 march1 coding upstream 52082 19708508 ~ 19756359 (+)
XLOC_000247 BX323590.2 coding upstream 102609 19705699 ~ 19705832 (+)
XLOC_000246 tmem192 coding upstream 142667 19649545 ~ 19665774 (+)
XLOC_000245 fbxo10 coding upstream 176288 19602389 ~ 19632153 (+)
XLOC_000251 UBA6 coding downstream 27973 19849168 ~ 19886389 (+)
XLOC_000252 apbb2b coding downstream 109325 19930520 ~ 19989584 (+)
XLOC_000253 NA coding downstream 202737 20023932 ~ 20027926 (+)
XLOC_000254 NA coding downstream 205694 20026889 ~ 20029066 (+)
XLOC_000255 prss12 coding downstream 248340 20069535 ~ 20141844 (+)
XLOC_000239 NA non-coding upstream 543471 19253027 ~ 19264970 (+)
XLOC_000238 NA non-coding upstream 649156 19113197 ~ 19159285 (+)
XLOC_000233 NA non-coding upstream 974998 18829172 ~ 18833443 (+)
XLOC_000230 NA non-coding upstream 1444570 18355746 ~ 18363871 (+)
XLOC_000256 NA non-coding downstream 325210 20146405 ~ 20147549 (+)
XLOC_000260 CR762427.1 non-coding downstream 1433158 21254353 ~ 21254482 (+)
XLOC_000262 NA non-coding downstream 1510230 21331425 ~ 21341653 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_07154407_07156385 ZBTB5 coding CI01000300 null 7154407 ~ 7156429 (+)