RNA id: TCONS_00000449


Basic Information

Item Value
RNA id TCONS_00000449
length 5798
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_000273
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22842935 ~ 22876174 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACTGAAAGGGGGGGAAATAGTTATTTTCAATAATGTGTCTTGTCTTCTGGGTTTATACAACTTACCCAGTGTTTAGCTTTGAAATACTGCACACATGCCGAGCCCAGAGCTCCTTTTCCCCCGTAAACAATCACTTTCTGTGCATCTGTAGCTGCCATTCTGTCTTCACGAGCACGAGACCGTGTTATGCAAAGAAATCAGAACATGCGCCTCCTACTGGAAAAGATGAGAAGAGCACACATAATTGTATTAGGATGGGTTGCGTATGGGTATAAGCTTAAAATAGacttacctttttttaaaaataatgtttttcgaGATTAATGTTTGAAAATAATCCATTAATGCTAATAAATATAAATGGGAACATCGCAACACATGTAAAACGATTTCTGACCAGCAGGTGGCAAAGGTCGTCTTTGCAAACTGCGCGACTACAAACAAAGAAGAAGAACACTTGTCTTCCGGAGGAAATACATGTAGTTGTATAGCATAGCTAGCGTTCTATGACAAGCTTTTCATTTTGCTTTGTCAGTAAGCTGATTGCGTATGATAATtggaaataatatttaacattccTCAAAACTCTTTCTCTCGGAGAGAGAAGGCAGTGACAGATTCAGGATGGATCCAGCTCTGCTGAGAGAGCGAGAGCTCTTTAAAAAGAGAGCTTTGTCAACTCCTGCAGTAGAGAAAAGACCAGCAGCCTCTGAGGCCTCTGGATCCTCcaagaagaaaaagagcaaacCAGACAAAGAGTCGTCATCTTCCTCCAAAAACAACAGTGATCCCAGCAATGGCTCATTCAATCTCAAAGCACTTTCTGGAAGTTCAGGATACAAATTTGGTGTTTTGGCTCGAATTGTCAACTACATGAAGACGAGGCACCAGCGAGGTGATACTCATCCTCTGACTTTAGAGGAAATTCTGGATGAGACCAAGCTACTGGACATTGGCATGAAGCAGAAACAATGGCTGATGAGTGAGGCATTAGCAAGTAATCCTAAGATTGATGTGCGGGAAGGGAAATATGCCTTTAAACCCAAGTATCATCTGAAGGATAAGAAAGCTCTGCTTAGACTTCTGGACAAACACGATCAGCTTGGTCTCGGAGGAGTGTTACTGGATGATGTTGAAGAGGGGCTACCCAATGCAGCCAAGGCTATTAAAGCGCTCGGGGATCAGATTATATTTGTGACTAGACCAGATAAGAAGAAGATTCTATTCTACAATGACAAGCACTGTCAGTTTGTCGTGGATGAAGAGTTTCAGAAGCTGTGGCGGAGTGTTCCTGTTGATTCCATAGATGAGGAGAAGATCGAAGAGTACCTGAAGAAACAGGGCATCTCATCAATGCAGGAGACTGGACCAAAGAAAATGGTACGATTTGTCTCTCAAACACATAGAAATCAACATTTACACACAGAAAATCAAACACACTCTTCAGACTGGCTATTACGTGCATGTTTGTGTGAGGTTGATGTGATTTGTGATTGGCTGTCACAGACACCAATTCAGAAGAGGAAGAAACCTGGAACCCAGAGAAAGAGACGCTATAAGACTCACAATGACCATCTGAATGGAGTGCTGGAGGACTACTTCGATGGAGTTCCCTCAAAGAAGTGACACACACAGCTGTAAAAAGCTCAGAGTGATGAGACTGATATCTGTGATGTTTGTATATCTGTTCTGATAACGTCTTATTGTCAACCATAAAGATATGcagacatacacatacacaacttTAGAACTGTTCTGAGTTGGCACAAATGTGAACAGACTGTAAATATTTCCTTTCCAACATTACGTTTTACTTTTTGCTAGTGCTTTAAAAATGGACTTTTGAGCTCTTCTTTTTTTAGGTTTAAAGATTAAACAAGAGCAATCAAACCACATCTGTTGTTTCTTTTTTGAGTTTATTAatgatgtatttaaaaaaaatacctttataaggccctatcatacacccggtgcaatacactaagggtgctttcacactagcacttttggtctgcacccgGTTTTGTTTGACATCAGagtatggtacgtttagctagtgtgaacgttgTCTTCTAAATTCAAGTGGGCACAACAAACCGTACCCAAGTCCACCTGAaggaggtggtctggggtaccaAATAAGGGAACTGAACTTCCAACtttacaacaaactttagttttcataatGTTTATTAGTGTGTGGATGTCTGTGTTAGAGATCTGCATGGGACTAAATTTTGTATCCTGCTTCCACCAGGTTTTAGTCAGAACCCCACCGCTCccacttatattcagcatttgttgtcctgcAGCCCGACCCACCCCGTTTAACAACACATATAATAGAtaagtataaacacacacacacagacagcatcacactctctctcattcacacacatagacagcacaaagctctctctctcttattcacacacacacacacacacacacacacacacacacacacacacacacagacagcacaaagctctctctctcttattcacacacacacacacacacagacagcaccaagctctctctctcattcacacacacagacagcaacaatCAAGCTAAACAGCATTTTTTGCGGCAGATAGATGCAAGTGgttttctgtattttggttttggtaacaaaagcaaaagattcagtaaaagcagaatgaccattTTGCTCTTTGCTTACATGgctgtcacctagcaacagctgtacacgCCACCGCAGCTTAATGACGAAACCAtaccagggttcagaaggaaaaaaacggtgtgaacacaaaccagccaagaaggtggcaaggggagaTTATCGAACTCTGGTTCAGTCCAGGCAACTGAACCacgtgtgaaagcaccctaagtgtttTTGGGTAGTTTCAAGCCAGTGCAGGTATCTTTTGCTCCTTTAGGGTTGTCCTCAGTGCTTGTATTCATTGCTTATTAGACTCACAGGGATGTGCAGGAGCCCAGTATTATCTTCAAATATGAAAAATTAAGTGATTAAAATGTCACGAGCAGATTCTTTtcctcgctagtgaagtgttcagttttgcCAGTTACAAAGTACTCGCTCTTAAAGATAATGGGAGAAGAGACTCTGATGGATTTAATGCCCAAAACACACCCATGAGAATAAGGACAACACTATTAGACTGTGTTGGATGCACTATacttaaatagcaaaagtggattcggacacccCTTAAGTGCATTTGCACTGTGTGCTTTAAATCATGTGCATATATGATTATAATACAGCCCTATATGTCATAGATGAAATGGTTTTAATATTAAAAGTGtaatgagaattttttttctgaacaaaaaaatgactgttataatgtcattattatgatATCCAGAAGACACCCACTTAATATAGTTTAGTGACAGTTAATATACCGAAACATATTGTCAAGCATGTTTAGAACAAGAATATTTGATGGTTTATTAAGACTCCTATTTAAGGATCTGACTATAatcatttatgatttttttctctgtctctctgtatTTGATTAGCAGTCGTTCTCTTGCAATTTTATCTACAAGCATGTTTCCTCAATTATTACAAATGATACAACTGAAATGCAGAGCACTAATGTTTTATCTTCTAAGCACAACTACATTGAAGTTATATTTAGAAAATCTCCataatctaacattataataataatcattcagTTTTACTTGTATGTTCTGTTCAGTGGCATAATTGATTCATCAACCCACATGCAGAACAAAGAAattcacaaatatataaatagatattaACACTTCACTGTACAGTACTTGTTATTATTTAGCACCTCAGATGTCTGTACATCTTTACACACGCTCAGCGTTTTTCAATCTCTGGTGTGTTTCACATAAATTGGAAACTTGAACTTgcattaagtttttaatttagggAATATGTGTTCTTTAATAACATGTTTTGCCGTAATAACTCCTAATCACAGTTTATTGATGGTTGGTTCTGTCTGGGCATCAGATGACACAATGACACATGGAACGGCCTTGGAATGACTATATCAAAAGTGCCAAAAGTGCACCACAATTCAAAAAATTAGTCAAGATCATGGAAATGAAGAGTAAACTAGaccctttttttaatgcaatacaATTCAAAAGAGCTTTGTCGGCATGACCTGTCAAGAATTGCAAAAGTATTGTAAATTACATGAATAATAAACTTCAAAgtgattatataataaatatacacaaaatacatacacaaataagaaaaaaaactaatattcttttgtgaataattaaagggagaaattaaaaaatacaaaaacaatacacaaatatatattcattctGATGGTTTGTAGTAACGTTTCAGATAACTTTCTTTCATTTGTGGAAATATACCTAAAAACCATTAATATGCACAAGGGCACAATACACATGAACTGTAGTGTCCTGAACAcgaatatattttgttatttttattaaaagggGCATATATCTATGCAGTATTTTAGATAGGGAGTACTTTGTGTTTTTTCTCTGTTCTTTTTCCTCAAGGCTGCACCATTTTTGAATAGAGTGATGATGAGTTGCACCAACAATCCGACAGCACCTGGTCAAGGACAAAGCCTTTATCGGCCATGACTACTCCTTCAGGCACCAGTAATCTAACAATTCCAGACTGTTTTGTTATCTTTTGGTCTAATATTGACCCTGCAAAGACCTTTAGGACAGAAGTGATTACACATATGGTGCAATACTTATCAGAGCCCTGAAAGAGGTCTGATTCTTGTAGGTGGAAAAGATTTCAAATCTAAATCGTGTTTAGATGGATAAAGTTACCTGGCATTGTTGTTCAGACCTGTTCCCTTGACATTCAGATTGGCTGTGACCCCAAGACAAGGTGTAAAGATTTCCTCCTTTTTCTTTCCTTCAAACCTCTTATAGCACAAGTCGGTGCTAAAAAAGTTAACATGCATTAACATTCTCTTTCACGCTGACTGCAGCACTACAACAGTACAAGGAAAAACACAACCTCGAATGCCAGTCTACAGTGTGGACTTGGTTTTCAATATTTATTGCATCCTGTATTCTCTGCTCGAGTAGACTAGGCATGGGGAGATACCCAGTTTTTAAGTTTGCTTTGGaaaagtaaaagttttaaaactgcataGATTTGGTTATAGCATTGCTAAGgtatatgtatgatttttttgtgttttttgtaaagaaatcttttttgaaactaatgaagatagcagatgtcatttatttattttatttacttaatttttagcctgacatgtttactgttccaaaatattttaaatgttttctaaaataaaatatattgtgtttaaaattttgttttttttacaccttttttagagtagtaataccgtgataccatgaaaccaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtacaatctaatttgtacaatttagtacgatttgcttatcccccaatgacggttagggttggggttaggggtggggttacgttaggtgccacgcctcctttttaaaatcgtatcatttagtacgactgaaatcgtacgaatttgtacaaattagccattaaactggcaaaacgtaaaatacttacgctttctcgtgagatcaggctgcatgaaacatgatattttatccaaggttatcattccTCCATAACAGCCCATGCCTAGAATAGACTATTTTGGATGCTGATAGGGAAACGGACTCCCAAAATTaaacatcaaaaaataataatgcgtTTATCGGTCATTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6794 Predicted to enable DNA binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIE complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 6. Orthologous to human GTF2E2 (general transcription factor IIE subunit 2).

Ensembl:

ensembl_id ENSDART00000193925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003067 lncRNA upstream 332507 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 332507 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 897798 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1349777 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003065 lncRNA upstream 1509608 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00000462 lncRNA downstream 502834 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 612937 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 629492 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 1242193 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 1250206 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00000447 mRNA upstream 147878 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000445 mRNA upstream 186163 22654875 ~ 22665098 (+) False XLOC_000271
TCONS_00000446 mRNA upstream 187089 22654908 ~ 22664172 (+) True XLOC_000271
TCONS_00000443 mRNA upstream 422408 22427135 ~ 22428853 (+) True XLOC_000268
TCONS_00000442 mRNA upstream 671706 22174251 ~ 22179555 (+) True XLOC_000267
TCONS_00000452 mRNA downstream 285195 23161369 ~ 23239849 (+) False XLOC_000274
TCONS_00000453 mRNA downstream 285950 23162124 ~ 23239849 (+) False XLOC_000274
TCONS_00000454 mRNA downstream 354285 23230459 ~ 23240046 (+) True XLOC_000274
TCONS_00000455 mRNA downstream 385683 23261857 ~ 23292761 (+) True XLOC_000275
TCONS_00000456 mRNA downstream 398536 23274710 ~ 23283468 (+) False XLOC_000276
TCONS_00000444 other upstream 329935 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1284660 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 1596779 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 2870274 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 3032165 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000457 other downstream 398748 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 628160 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 874925 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 990704 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 1238351 24114525 ~ 24114558 (+) True XLOC_000287

Expression Profile

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