RNA id: TCONS_00000456


Basic Information

Item Value
RNA id TCONS_00000456
length 1592
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_000276
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23274710 ~ 23283468 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGATGAATCGATGTCAGAGTGATTGTTGTCAATGACAGGCTCGAGCTGGATCTAAAGTCATGGCGTTGATCAGTAGAAGTTGTGGAGCTGCGAGCCGATATTCTTCAAGTCATCTGTTTTTACCATCTAAAGGCGCCGAGGCGGCTAATGTGTACTGTAACAGACTGAGCACTGCTGCcagcacatcatcatcatcatcaccatccaCACACAATGACAGGAAGAAAGACCTGAGGGAGGATGGACTGAACCTGCAGGACTTCATATCTGGAGAGCTGTCAGAAAAGAGCAAGTGGGAGGAATACAGAGGCAACCTAAAGAGAGAAAAAGGAGAAAGGTTAAGGCTACCACCATGGCTGAAGACAGAGATTCCTATAGGGAAAAACTACAACAAATTGAAGAATACACTTAGAGAATTAAACCTCCACACAGTCTGCGAAGAAGCCCGTTGTCCAAATATTGGTGAATGTTGGGGTGGAGGAGAGTACGCCACGGCCACAGCCACCATTATGTTAATGGGGGACACATGCACACGTGGCTGTAGGTTTTGTTCAGTTAAGACAGCGAGACGTCCTCCACCTCTTGACCCCGATGAGCCATATAACACCGCTAAAGCCATTGCAGCATGGGGTCTGGACTATGTAGTACTCACATCAGTGGACCGAGATGACATTCCTGATGGTGGCGCTGAACACTTTGCAAAGACTGTCTCCAACATTAAAGAAAGGAACTCTAAAATCTTGGTAGAGTGTTTGACTCCTGATTTCCGTGGCGATCTGGCAGCGGTGGAGAAAATTGCTTTGTCTGGCCTTGATGTTTATGCTCACAATGTAGAGACGGTCAGAGAGTTACAGAGGCATGTACGTGACCCCCGGGCAAACTTTGACCAATCACTGAGTGTTTTACGACATGCTAAAAAGGTGAAATCCAGTGTGCTCACAAAAACTTCTATCATGCTGGGGCTCGGAGAAACAGATGCACAAATACAAGCCACTTTAACAGAATTGAGGGACTCTGGTGTGGATTGTCTAACCCTGGGGCAGTACATGCAACCAACCAAACGCCATCTTAAGGTGGAAGAATATGTCACCCCTGAAAAGTTTGCGTTTTGGGAGAAGGTTGGCCAGGAGATGGGCTTCATCTACACTGCCAGTGGACCACTTGTGCGCTCGTCTTATAAAGCAGGGGAGTTCTTTTTGAAGAATCTGCTGGAAAAGAGGAAGACTGAAGAAACCACAGCAACAGCAGAGTAAACCTGCTCCACATCTCCTGTGTTCTAcagtactctctctctctctgcttaaatattaaacaatataacACTGATgctccacacaaaaatgaaagttgCCATCATTTGCTCAACCTCATGATGTTTTCTTGTGCGGAACACAACATACATACTTTAATCCTAGAGGTGAGGAAATGGTTACAGGATTCAAAATCCAGGGCTACAAAATGCCTTGAAGTATACttattacaaaataaactgcTACAGTTGCATTCTGTAAAAGTGTTTAAATAAAGATGTTGGGTTGGTTGTTTTAGAAATGAATCTCAGAATATATTAAATGAATTCTTGTCAAAGTA

Function

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0009107 lipoate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016992 lipoate synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0102552 lipoyl synthase activity (acting on glycine-cleavage complex H protein molecular_function
GO:0102553 lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00785 Lipoic acid metabolism
ko02020 Two-component system
ko01001 Protein kinases
ko02022 Two-component system

ZFIN:

id description
ZDB-GENE-040426-1528 Predicted to enable lipoate synthase activity. Predicted to be involved in lipoate biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human LIAS (lipoic acid synthetase).

Ensembl:

ensembl_id ENSDART00000036448

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003067 lncRNA upstream 755956 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 755956 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 1321247 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1773226 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003065 lncRNA upstream 1933057 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00000462 lncRNA downstream 95540 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 205643 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 222198 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 834899 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 842912 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00000454 mRNA upstream 34664 23230459 ~ 23240046 (+) True XLOC_000274
TCONS_00000452 mRNA upstream 34861 23161369 ~ 23239849 (+) False XLOC_000274
TCONS_00000453 mRNA upstream 34861 23162124 ~ 23239849 (+) False XLOC_000274
TCONS_00000451 mRNA upstream 402436 22851746 ~ 22872274 (+) True XLOC_000273
TCONS_00000450 mRNA upstream 415810 22851745 ~ 22858900 (+) False XLOC_000273
TCONS_00000458 mRNA downstream 28149 23311617 ~ 23322588 (+) False XLOC_000277
TCONS_00000459 mRNA downstream 28149 23311617 ~ 23322969 (+) True XLOC_000277
TCONS_00000460 mRNA downstream 89002 23372470 ~ 23396454 (+) False XLOC_000278
TCONS_00000461 mRNA downstream 89026 23372494 ~ 23393815 (+) False XLOC_000278
TCONS_00000463 mRNA downstream 114937 23398405 ~ 23398992 (+) True XLOC_000279
TCONS_00000444 other upstream 753384 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1708109 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 2020228 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 3293723 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 3455614 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000467 other downstream 220866 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 467631 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 583410 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 831057 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000490 other downstream 1099499 24382967 ~ 24384697 (+) True XLOC_000295

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_08949418_08957810.mRNA True 1623 mRNA 0.47 11 CI01000300 8949321 ~ 8957857 (+)