RNA id: TCONS_00000454


Basic Information

Item Value
RNA id TCONS_00000454
length 1043
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_000274
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23161369 ~ 23240046 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGGGAACCCTCAAATGCACTGGTAGTCTTGTCATGCTATGCACACATATTATACACATACATGTATGCACACCACAGAAGCACAACTTTTATCTCAGATGTCTGAACACAGTCAGCTTGTATCTGTGTTTGTGGCAGGTGGGTGAAGTGGACGTCCCTCTGTTCTCCTGTCTCAACACACACGATTCTGTGGACGGGAACGTCGATATCAGAACTGTCACTGTTCAGAAGCATGAGTGTGACTCTGTGGAGCTGAGAGTGAGAGACACGCTGGGACATGCAGGAATGTACATCTCTAAGCTGGACGCAAGCACGCTGGCCGCACGCTCAGGACTTTTGCAGCTGGGTTCCAGAGTCATCAGCATTAATGGGACACAAACAGAAAGGCTCTCAGTCGCTGAGGCAAGCTTCCTTCTGAAAAACAGCAGCGGAGCAGTGACACTGCAGGTAATGCCGAGTGGATGTGCAGATGGAGCCAGTATAAGTACAGATCGGTCATCTTTAATTCACTCCTCACCTGGACTCTCAGAAAATTACACTACTCACAACCACCAGAGTTCTCCTCAGTACCAGACCATCACTCTTGAACGTGGCTCCGCCGGGCTTGGCTTCAGCATCGTAGGAGGATTTGGCAGTTCCCATGGTGACTTGCCCATCTATGTCAAGAACATATTTCCCAAGGGAGCTGCGGTGGAGGACGGGCGTCTGCGGCGTGGAGATCAGCTGCTGACAGTCAATGGACAGAGTCTGGAGGGTGTCACTCATTCTGAGGCTGTCGAGATCCTTAGACAAACCAGCGGGACAGTTATTCTACAAGTACTCTCAAAAAGACCACCATCATGCTGATAATGTCACACAATGACACGGTCCCATCGTGAAGATTCTCACAGAGCAGATGACGGATTGTTAAATGTGTTATGGAGACTGCTTCTACCAGCTGTATTTCTCAAAAATGTCTCCTGGAATGTGTAGTTTTTTAATATATCTATTTAATTGCAAGGATATCTAGGAAAAAAATGTGGAAGTAAGCTGTGCAAAGTGGG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-354 Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane.

Ensembl:

ensembl_id ENSDART00000147857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003067 lncRNA upstream 711705 22510734 ~ 22518754 (+) False XLOC_000269
TCONS_00003068 lncRNA upstream 711705 22511061 ~ 22518754 (+) True XLOC_000269
TCONS_00000439 lncRNA upstream 1276996 21951258 ~ 21953463 (+) True XLOC_000266
TCONS_00003066 lncRNA upstream 1728975 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00003065 lncRNA upstream 1888806 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00000462 lncRNA downstream 138962 23379008 ~ 23380210 (+) True XLOC_000278
TCONS_00000466 lncRNA downstream 249065 23489111 ~ 23506518 (+) False XLOC_000281
TCONS_00000468 lncRNA downstream 265620 23505666 ~ 23506518 (+) True XLOC_000281
TCONS_00002830 lncRNA downstream 878321 24118367 ~ 24119067 (+) True XLOC_000288
TCONS_00003069 lncRNA downstream 886334 24126380 ~ 24144170 (+) True XLOC_000289
TCONS_00000449 mRNA upstream 354285 22851261 ~ 22876174 (+) False XLOC_000273
TCONS_00000448 mRNA upstream 356544 22842935 ~ 22873915 (+) False XLOC_000273
TCONS_00000451 mRNA upstream 358185 22851746 ~ 22872274 (+) True XLOC_000273
TCONS_00000450 mRNA upstream 371559 22851745 ~ 22858900 (+) False XLOC_000273
TCONS_00000447 mRNA upstream 527076 22691256 ~ 22703383 (+) True XLOC_000272
TCONS_00000455 mRNA downstream 21811 23261857 ~ 23292761 (+) True XLOC_000275
TCONS_00000456 mRNA downstream 34664 23274710 ~ 23283468 (+) False XLOC_000276
TCONS_00000458 mRNA downstream 71571 23311617 ~ 23322588 (+) False XLOC_000277
TCONS_00000459 mRNA downstream 71571 23311617 ~ 23322969 (+) True XLOC_000277
TCONS_00000460 mRNA downstream 132424 23372470 ~ 23396454 (+) False XLOC_000278
TCONS_00000444 other upstream 709133 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000435 other upstream 1663858 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000430 other upstream 1975977 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000420 other upstream 3249472 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 3411363 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000457 other downstream 34876 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 264288 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000472 other downstream 511053 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000478 other downstream 626832 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000480 other downstream 874479 24114525 ~ 24114558 (+) True XLOC_000287

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_08917691_08926730.mRNA True 1834 mRNA 0.37 5 CI01000300 8917691 ~ 8927877 (+)