Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000424 |
| length | 971 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 9 |
| gene id | XLOC_000258 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 20635190 ~ 20706296 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090311-24 | Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3). |
| ensembl_id | ENSDART00000145418 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003062 | lncRNA | upstream | 487641 | 20146405 ~ 20147549 (+) | True | XLOC_000256 |
| TCONS_00002829 | lncRNA | upstream | 606124 | 20026889 ~ 20029066 (+) | True | XLOC_000254 |
| TCONS_00002828 | lncRNA | upstream | 607264 | 20023932 ~ 20027926 (+) | True | XLOC_000253 |
| TCONS_00000412 | lncRNA | upstream | 813995 | 19808441 ~ 19821195 (+) | False | XLOC_000250 |
| TCONS_00000398 | lncRNA | upstream | 1168970 | 19461925 ~ 19466220 (+) | True | XLOC_000242 |
| TCONS_00003063 | lncRNA | downstream | 241610 | 20936725 ~ 20938443 (+) | True | XLOC_000259 |
| TCONS_00003064 | lncRNA | downstream | 636310 | 21331425 ~ 21341653 (+) | False | XLOC_000262 |
| TCONS_00003065 | lncRNA | downstream | 636489 | 21331604 ~ 21341653 (+) | True | XLOC_000262 |
| TCONS_00003066 | lncRNA | downstream | 805530 | 21500645 ~ 21501484 (+) | True | XLOC_000263 |
| TCONS_00000439 | lncRNA | downstream | 1256143 | 21951258 ~ 21953463 (+) | True | XLOC_000266 |
| TCONS_00000423 | mRNA | upstream | 28038 | 20593653 ~ 20607152 (+) | True | XLOC_000257 |
| TCONS_00000422 | mRNA | upstream | 493346 | 20084389 ~ 20141844 (+) | True | XLOC_000255 |
| TCONS_00000421 | mRNA | upstream | 496543 | 20069535 ~ 20138647 (+) | False | XLOC_000255 |
| TCONS_00000417 | mRNA | upstream | 645606 | 19930520 ~ 19989584 (+) | False | XLOC_000252 |
| TCONS_00000429 | mRNA | downstream | 241596 | 20936711 ~ 20938512 (+) | False | XLOC_000259 |
| TCONS_00000431 | mRNA | downstream | 614271 | 21309386 ~ 21312596 (+) | False | XLOC_000261 |
| TCONS_00000432 | mRNA | downstream | 614289 | 21309404 ~ 21312088 (+) | True | XLOC_000261 |
| TCONS_00000433 | mRNA | downstream | 868196 | 21563311 ~ 21566376 (+) | False | XLOC_000264 |
| TCONS_00000434 | mRNA | downstream | 868219 | 21563334 ~ 21573013 (+) | False | XLOC_000264 |
| TCONS_00000420 | other | upstream | 654203 | 19975591 ~ 19980987 (+) | True | XLOC_000252 |
| TCONS_00000414 | other | upstream | 816094 | 19814865 ~ 19819096 (+) | True | XLOC_000250 |
| TCONS_00000413 | other | upstream | 819741 | 19808451 ~ 19815449 (+) | False | XLOC_000250 |
| TCONS_00000408 | other | upstream | 929358 | 19705699 ~ 19705832 (+) | True | XLOC_000247 |
| TCONS_00000400 | other | upstream | 1095551 | 19535120 ~ 19539639 (+) | False | XLOC_000244 |
| TCONS_00000430 | other | downstream | 559238 | 21254353 ~ 21254482 (+) | True | XLOC_000260 |
| TCONS_00000435 | other | downstream | 869391 | 21564506 ~ 21566601 (+) | True | XLOC_000264 |
| TCONS_00000444 | other | downstream | 1826097 | 22521212 ~ 22521326 (+) | True | XLOC_000270 |
| TCONS_00000457 | other | downstream | 2579807 | 23274922 ~ 23279702 (+) | True | XLOC_000276 |
| TCONS_00000467 | other | downstream | 2809219 | 23504334 ~ 23505103 (+) | False | XLOC_000281 |
