RNA id: TCONS_00000421


Basic Information

Item Value
RNA id TCONS_00000421
length 2451
RNA type mRNA
GC content 0.55
exon number 13
gene id XLOC_000255
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20069535 ~ 20141844 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATGTGAGGTGTCGGTTCGTCTTTACGGTCTGCGCGCTTCTGCTTATGATCGCGCGCACTGGCGGCTCTCCGTTCACTGACTGTGTTCAGAGCAAAGGGAAAGCGGGCTTTTACGAGGGGTCCATTGACTCAACCGAATCAGGCGTGAAGTGCATGAACTGGAGCGATGTGCCCGGTGTTAGAGAGCGGTATCAAGGTAAAGGGCTCGGAGATCACACTTTCTGCCGAAATCCGGACGGGAGAATTCGGCCCTGGTGCTTCTTCACGAACAACAGAGGACGCATTGACTGGGGATACTGCGACTGCAAGCAGGGCTCTTTGCGACTGCAGGGAGGCAGATCTAAACTGGATGGTACAGTAGAAGTGTATCTCAATGGTGTGTGGGGAACCATCTGCAGTAATGGCTGGGATGACCAAGATGCCGCTGTGGTGTGTCGACAGCTGGGACAGGGCTATAGAGCACATGCACGCATGAGTCCTCTGTCACGTCTGGTGGTGTCTGTAGTTCACTGGCAGACTGTGGGCTGTGAAGGACAGGAAGATGACTTACTGCAATGCAATCGCACCGTCTGGAACGGGGGAGAGTGTGAGAATCGCCAAGCGGCTGCTGTTTCTTGCATGCCGGTGGAGACTTCAGTGTTTGTCCCAGTGCGGCTATCTGGTGGTCCATCGGCATATGAGGGCAGAGTAGAGGTGTATCATGCAGGACAGTGGGGCACAGTTTGTGATGACCAATGGGATGATAACGACGCTGAGGTGGTCTGCAGGCAGCTGGGGTTAGGTGGCATTGCGAAGGCTTGGGTGGGAGCGTATTTCGGCGCAGGCTCTGGGCGTGTGTTTTTGGATGAGGTGAGCTGCACCGGAAATGAGCTTTCAATAGAGCAGTGTCCAAAAACTGCCTGGGGGGAGCATAACTGTGACCACACAGAGGATGCTGGAGTGTCCTGTGTACCACTTACAGACGGTGCAGTGCGTCTGGTTGGGGGTGTAAAGGGTTATGAAGGGAGACTGGAGGTCCATTACAGAGGACAGTGGGGGACTGTGTGTGATGATGGCTGGACACAGACTAACACACAGGTCGTCTGCAGGCAGCTGGGTTTCAGGTCAGGGGAGAGTGTATCAGCAGGGCGGTTTGGGATAGCGGCAGGTCCTGTTCTTCTGGATGATGTGCGCTGTACTGGAAAAGAGCCCACGGTCACACACTGCAGCCGGAGGGGTTGGTTTAAACATGACTGCACTCACAGACAGGATGTAGCCATTGTGTGCAGCCCCCAATGCTCCAGACATGGAGTACCCAACAGTTTACCTGTGAGGCTGGTGGGcggagagaatgagagagaggggCGTGTAGAGATCCTGGTGGGTGGCCAGTGGGGGACGGTGTGcgatgatggatggacggatcGGGACGCAGAAGTGGTGTGCAGACAGCTGGGTTACAGTGGGCTGGCTAAAGCTCGTGTAATGGCATATTTCGGAGAAGGCGAAGGTCCTATCCACATTGACAATGTAAAGTGTACAGGCGGGGAGCATTCCCTGACTGACTGTATCAAACAGCCATTCGGGACACACAACTGTCGCCATAGTGAGGATGCCGGTGTTATTTGTAACTATGGGTTACAGCAGGATTCTCCTGGGGTCAAAGTTGGCTCCATGTGTGGTCTAAGACTCTCTCACACACGTCAGAAGAGAATTATAGGAGGAGAAAACTCTCTACgTGGTGGCTGGCCGTGGCAGGCAGCTGTGCGTTTACGGGGTTCTCAGGCAGATGGACGCTTGGTATGTGGAGCTACTTTGATCAGCAGCTGCTGGATCCTCACTTCAGCTCACTGCTTTAAGAGGTATGGGAACAGCACAGGGCTGTATAAAGTTCGTGTTGGTGATTATCACTCTCTGGTCCCTGAGGAGTATGAGGAAGAGTATGCCGTGGAGAAGATCGTCCTTCACCCACGCTACCATGCAGACAGTAGTGACTATGACCTGGCACTTCTGCGTGTTTCTGGACACAGAGCTCACAGGGGTGTCACGGGCCAATGCGTCACACTGAGCCGATCAGTGCTGCCCGCTTGTTTACCAGTGCGGAGAGAGAAAGTGCCAAAGGGCATTGCCAACTGCTACATCACAGGCTGGGGAGATACAGGTCGTGCATATTCCAAAACTCTCCAGCAGGCCTCCATTTCTGTGTTGAGCAAGCGTCAGTGTGAGCAGCGCTACTCGGAGCAGTTCACCAATCGTATGCTGTGCGCCGGCTCGTCCCATGATGCCCAGCGTGTGGACTCCTGCCGTGGCGATAGCGGTGGTCCGCTGGTGTGCGAGAGGCCAAGCGGGAGCTGGGTTGTTTATGGGGTCACATCATGGGGTCACGCGTGTCGCCTGCAGGAAGCACCCGGGGTATACACCAAAGTCTCCGCCTTTGTGCCCTGGATTAAGAAAGTTATTGGCCAGTAG

Function

GO:

id name namespace
GO:0031638 zymogen activation biological_process
GO:0006508 proteolysis biological_process
GO:0030425 dendrite cellular_component
GO:0043083 synaptic cleft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043195 terminal bouton cellular_component
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-090313-45 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in zymogen activation. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be active in several cellular components, including dendrite; synaptic cleft; and terminal bouton. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and intellectual disability. Orthologous to human PRSS12 (serine protease 12).

Ensembl:

ensembl_id ENSDART00000088653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002829 lncRNA upstream 40469 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00002828 lncRNA upstream 41609 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000412 lncRNA upstream 248340 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00000398 lncRNA upstream 603315 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000397 lncRNA upstream 607072 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00003062 lncRNA downstream 7758 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003063 lncRNA downstream 798078 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00003064 lncRNA downstream 1192778 21331425 ~ 21341653 (+) False XLOC_000262
TCONS_00003065 lncRNA downstream 1192957 21331604 ~ 21341653 (+) True XLOC_000262
TCONS_00003066 lncRNA downstream 1361998 21500645 ~ 21501484 (+) True XLOC_000263
TCONS_00000417 mRNA upstream 79951 19930520 ~ 19989584 (+) False XLOC_000252
TCONS_00000418 mRNA upstream 80473 19933065 ~ 19989062 (+) False XLOC_000252
TCONS_00000419 mRNA upstream 118740 19943803 ~ 19950795 (+) False XLOC_000252
TCONS_00000415 mRNA upstream 183146 19849168 ~ 19886389 (+) False XLOC_000251
TCONS_00000416 mRNA upstream 183403 19855490 ~ 19886132 (+) True XLOC_000251
TCONS_00000423 mRNA downstream 455006 20593653 ~ 20607152 (+) True XLOC_000257
TCONS_00000424 mRNA downstream 496543 20635190 ~ 20695115 (+) False XLOC_000258
TCONS_00000425 mRNA downstream 496567 20635214 ~ 20705079 (+) False XLOC_000258
TCONS_00000426 mRNA downstream 496625 20635272 ~ 20700456 (+) False XLOC_000258
TCONS_00000427 mRNA downstream 496740 20635387 ~ 20706296 (+) False XLOC_000258
TCONS_00000420 other upstream 88548 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000414 other upstream 250439 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000413 other upstream 254086 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000408 other upstream 363703 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 529896 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000430 other downstream 1115706 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 1425859 21564506 ~ 21566601 (+) True XLOC_000264
TCONS_00000444 other downstream 2382565 22521212 ~ 22521326 (+) True XLOC_000270
TCONS_00000457 other downstream 3136275 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000467 other downstream 3365687 23504334 ~ 23505103 (+) False XLOC_000281

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_07272403_07311667.mRNA True 2908 mRNA 0.52 14 CI01000300 7272403 ~ 7311965 (+)