CI01000339_01172551_01191348 (SPOCK3)


Basic Information

Item Value
gene id CI01000339_01172551_01191348
gene name SPOCK3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1171336 ~ 1191348 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01172551_01191348.mRNA
CTCTGGACCCTGCCAAAGATCCGTGCCTCAAGATGAAATGTGGCCGCCATAAAGTGTGTGTGGCTGAGGATTACCAAACACCCACCTGTGTCAGTCAACGCAGGATGAGTTTTAAGGACATGAATTTGAACTCACCACTGCTGAAATGCAAAAGATGTCCAGTTGTGCACCCTTCACCTGTTTGTGGAACAGATGGACACACTTACTCCACCAAGTGTAAACTAGAATATCAAGCTTGCATCTCTGGGAAGCAGATTTCTGTGAAGTGTCCAGGACAGTGTCCCTGCCTTTCAGGAAATACAGCAGAGAAGAGAGAGTGTGGTAATGCAGAGATGACTGAAGTGGTCAGCAGATTACGAGAGTGGATCACGGTTCTTCATGAGAGTGGCAATCCCAGCAAGAAATACAAGTTCCAGAAGCCAGAGAGGAAGGTGGACATGAGTAAGGTGCCCCTCTGTAAGGACTCTCTGGGCTGGATGTTCTCCAGGCTGGACACAAATTTTGACCTTCAACTCGACCAATCAGAGCTGTCCAGCTTGAGCTCAGAGAAGAGTGATGTGTGCACTAAAGCCTTCCTCAGGTCATGTGACCCAGACAGAGACAGGCTCGTTTCTAGCCAGGAGTGGTGTTCTTGCTTTCAGAGATATCAAGAAGCTCCCTGCCAATCAGAGATCACTATCATCCACAAACAGCAAGCTGGGAAGAAATTACTGGGTCCATACATCCCCTCCTGTGATGAGGATGGCTTCTATAGGCCTCACCAGTGTCATGGTAGCAGTGGTCAGTGCTGGTGTGTCGACCGCTATGGAAACGAGGTTGCAGGGTCTCATACCCACGGGCCTGCTGACTGTGGTAAGCCTACGTAACCTCACATCTTTAGATTCATTATCTAGTAATGAGAAAAAAGTCAAATTAGTAATCCATTTAATATGTAAAATATAGGGATGCAATGATATAGAATTTCTGGGCTGATACGATAACCAATCATTTTACGTTTCGCATTTTAAACCTTCCAACTGGAGTGGCTAGTTAAAGGGTTAGTTCACCCAAAAATTTAAATTCTTTCTTTAATTACTCACCCTCATCTAGTTCCAAACCTGTAAGACCTTCATTCATCATCTGAACACAATTTAACATATTTTTGATGAAATCCAAGAGCTTTCTGATCCCAATGCAATTACAACTTTCAAGGTCAAGAAAGGTAGTAAAGTCATTGTTAAAATAGTCCACGTGACTACAGTGATTCAACCTTAATTAAATAACAACAAAAATAATGACTCAACAATTTCTTCTCTTTCGTGTCAGTCTCCGACGCTGTTCACGTGAGCAGTACGTTGCATGCGTGTGATTCTGATGCAGGAGCCGGCCAATAATGAGACGGCATTCTGACATAGAACCTGGAAGCGCTGCACTGTGTTTACAATGTGAAAAGAGTCGGAGACTGACACGGAAGAGAAGAAATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTTGTTTTTGCGCACAAAAAATATTCTTGTCACTTCATAAAATTAAGGTTGAACCACTGTAGTCACATGGACTAATTTAACGATGACTTTACTACCTTTTTGGGCCTTGAAAGTGGTAATTGTGTTGCTTTCCATGGGGGATCAAAAATATCTCAGATTTAATCAAAAATATCTTAATTTGTGTTCCGAAGATAAACGAAGGTCTTACGGGTTTGGAACGACATGAAGGTGAGTACTTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTAAATTAGCTAATAAACTAGAAAACAATCAGTGGACACAAAATAGTATCTTTTTTTTTTTTTTAAATCTTACAATCTGGAATTTACAATGCATACAAGTATTCTGACCATCAAACTATACCAAGTATTTGTGAAAATATTCAGAGTATTAGTTCTTGCGTTCAATAATAGTTACATTAAATGAAACGCAACGAAATGGAGTCCTTGGATTTCAAGTTTTTAACTTGACATGGCGTGTTCATGGCATGAGATCCTGAAAAATGCTGATGAAGGCCTTGGATGGCCGAAATGTGTCATGTTTTTTAATTAATAAA

Function

symbol description
spock3 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; nervous system; and neural tube. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01172551_01191348.mRNA True 2081 mRNA 0.41 7 1171336 1191348

Neighbor

gene id symbol gene type direction distance location
CI01000339_01082705_01091230 LAS1L coding downstream 80106 1082643 ~ 1091230 (-)
CI01000339_01061363_01065408 ZC4H2.L, ZC4H2, HC127 coding downstream 105240 1060274 ~ 1066096 (-)
CI01000339_01039430_01047595 MTMR8 coding downstream 123741 1039146 ~ 1047595 (-)
CI01000339_01034668_01037181 ASB12A coding downstream 134155 1034298 ~ 1037181 (-)
CI01000339_01025998_01028865 AMER1 coding downstream 142404 1025974 ~ 1028932 (-)
CI01000339_01242435_01246985 NA coding upstream 49783 1241131 ~ 1246985 (-)
CI01000339_01287752_01312897 NA coding upstream 95574 1286922 ~ 1312897 (-)
CI01000339_01327907_01343305 GLRA3, GLRA4A, GLRA4B, GLRA4 coding upstream 136369 1327717 ~ 1344940 (-)
CI01000339_01346138_01360618 AIFM1 coding upstream 154394 1345742 ~ 1360618 (-)
CI01000339_01373395_01377800 NA coding upstream 182047 1373395 ~ 1377800 (-)
G481163 NA non-coding downstream 31294 1138563 ~ 1140042 (-)
G481272 NA non-coding downstream 113012 1056645 ~ 1058324 (-)
G481266 NA non-coding downstream 208848 961751 ~ 962488 (-)
G481261 NA non-coding downstream 249610 921375 ~ 921726 (-)
G481253 NA non-coding downstream 280161 890944 ~ 891175 (-)
G481576 NA non-coding upstream 126259 1317607 ~ 1317886 (-)
G481557 NA non-coding upstream 131019 1322367 ~ 1326907 (-)
G481578 NA non-coding upstream 137319 1328667 ~ 1328867 (-)
G481588 NA non-coding upstream 175599 1366947 ~ 1367223 (-)
G481589 NA non-coding upstream 177018 1368366 ~ 1368577 (-)
G481157 NA other downstream 55188 1114129 ~ 1116148 (-)
CI01000339_00932339_00951205 SMARCA1 other downstream 217902 931680 ~ 951205 (-)
G480969 NA other downstream 1081139 85093 ~ 90197 (-)
G481610 NA other upstream 380189 1571537 ~ 1573962 (-)
G481662 NA other upstream 532422 1723770 ~ 1733019 (-)
CI01000339_01988812_02024891 NA other upstream 797827 1988537 ~ 2025183 (-)
G483104 NA other upstream 2202760 3394108 ~ 3401228 (-)
G483199 NA other upstream 2586543 3777891 ~ 3778551 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000258 spock3 coding NC_007112.7 CM002885.2 20635190 ~ 20706296 (+)