CI01000339_01287752_01312897


Basic Information

Item Value
gene id CI01000339_01287752_01312897
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1286922 ~ 1312897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01287752_01312897.mRNA
AGCTCCCAGAGGCCAATAGGATGCTGACAGCTCGGGATGGAGCTCGAGATGAAGCTCAGAAGCTGCACAGGAAATGGATGAAGCACCAGGCCTTCATGGCCGAACTGGCCCGCAACAAAGAATGGCTTGCCAAGATCGAACAGGATTTTGTTTCAGGACTACAGCTGTGTCAGAACTCTAGCATCTATTTTACAGTTATGCAGGAGGGCGAGGAGCTGATCCAGGAACAGCCAGAGTTGCGATCGGTGGTGGAGATGAAGTTGAAGGAAATCAGAGAGTGCTGGTCTCACCTGGAAAACACCACAAAAGTCAAGGCCCGCCAGCTCTTTGAAACCCAGAACCACCGCACTACCGACCTGCCTACCAACAACCTTAGTGACCTGGACCAGCATCTCAACGTCATACAGGAGCAGCCACCCACACTAGGCTCCGCCCACACCACTCAACCCACCCTCCTTCAGCCCCGCCCCACTTTTAGCCAGCAACTCCAGAGGATACAATCGTTGGAAGCCCAAATGCAGCTCTATCATGGCGTTGGTGAAGTCAGGGGCAGCACTGATCACCGGAGACCAGAAGAAGAAGAGCAAGGAGGTGTGGTGGAGACCCGAATCGTGCGTCTTATTGAGCCTCTGAAGGAAAGGAGGCGGATCCTTCTTGCCTCAAAAGAAATGCACCAGGTCACCCAGGACCTGGAGGATGAGATTTTATGGATTCAGGAACGGTTACATTTGGCCTCATCTACAGAATATGGGACCAATCTGCAGAGTGTCCAGCATTTAATCAAAAACCACGAGGCACTGCAGATGGAGATGCAGGCTCGGAGGGGGCGGGTCGAGGAGGTACTGGACAGGGCGGAGGCCGTTGCTGCTCTGAGGACCCCAGAGGTGGAGCTTGTGCGGGAGGGGGCGGGGCATGTGAGGCAGCTGTGGGAGGTGCTCCAGGTAGAGATGGAACGTCGCACAGTGATGCTGGATGCTGTGAGCCATGCCCAGCAGTACTATACCCAGGCAGCGAAGGCGGAGTCTTGGCTCAGTGGACAGAAACTTCAGGTCCTCAATGAGGAAAAAGGAAACGACGAGGCCAGCACTCTTAGGTTACTGAAAGAGCAGTTGGCCTTAGATCAAACAGTAGAGAATTATGCAGAGACAGTGGGCTCACTGTCCCAGCAGTGCCGTCGCATGCTTGAGTTGGGACATCCAGATAGTGAGCAAATCACCAAACAGCAGGCTCACATAGACCGGCTGTATGTATCTCTGAAAGACCTGGTGGAACAGAGGAAAACAAAGCTGGAGCAGCAGTACTGGCTGTATCAGTTGAAGCGAGAAGTGGAGGCGCTGGAGAAATGGATCTCTGAGAGGGAGGCTGTCGCCAGCTCCACTGAATTAGGCCAGGACCTAGAGCATGTCACGGTTCTGCAGGGCAGCTTTACTCAGTTCTCCTCTGAGACACGTGCAGTGGGTCAGAAACAGATGGATTCTGTCAATAAGATGGTGAATGAGATGATTGACTGCAGTCACTCTGATGCCGCCACCATCGCAGAGTGGAAGGACGGACTGAATGAGTCTTGGGCGGATCTTCTGGAGCTGATGGAGACCAGAGCGCAGATGCTCGCAGCTTCGTACCAATTGCACAAGTTCTTCACTGACTGTCAGGAGGTGCTGGTCCAAATCGAGGGAAAGATGAGACAGCTGCCAGAGGTGAGGTCCTGTCAGGTGAGCTCGGCCAACCCTGGCACACTGCAGAGACTTCTGCACTCTTTCGAGCATTCCCTGCAGCTGCTGGTCTCGCAGGTGCGCCAACTGCAAGAAAATGCAGCTCAGCTGCGTGCAATTTACGCAGGGGAGAAGGCAGATGCCATTTTGTGCCGTGAGCAGGAAGTGATGCAGGCCTGGAAAGAGCTCCTCGTTGCATGTGAGGGCAGCCGTGTGCAGGTTACCACAGTAACCGATAAGATCCAGTTCTTCGCTGTGGTGCGAGAACTGAGCATGTGGATGGATGGAATCATGGGACAGATTGGCTCGACTGATGATGCCAGGGACCTCTCTGTGCTGGAGGGCATGATGTCCCAACATCAGAATTTGAAGAGTAAGATAGATAACAAGAGCAAGAACTTTGTGCATTGCGTGGAGATGGGGAAGATGCTGCTCGCTGCACGCAACCCCGCAGCTGAAGAGGTAAAGGAAAAGCTAGAATATGTCATGGCAAAGCAGAAAGACTTGAATGACCGATGGGAACAGCACTGGGAGAAGCTTCAGCAAGCCCAGCAGAGGCTGCAGTCTACCCAGCCGGGATTGGCAGAGCAATCCTGGCTCACAATCAAGGAACCAATCACTCCAAACACTCGTGAGGCAGGGGGCGGGACAGACGAGGTGGAGGAGCTGATTCGCCGGCATGAAGCATTCAGGAAGGCTGCAGCCACATGGAAGGACCATTTCAGCTCATTACGACAGGCAGAGAAGATGAAGGAGGAACTGAACAAGCCACCTTCTACCTCTTCTCTCCTCAGTAGGCAGATGTTCCCTCTCTCCTGTCTTGTGCCCAGCTCCTCTTCCTCATCCTCGTCCTCCTCTCTTTTCCGTAACCCTCTTCAGGACTCACTTCTGGAGTCCAAGCCCGGGCCGGACCTCATGCACGCCACAGAACACATGGTGGCACACACACTTGCTCAGCGGCTTGGGTCCACCCTGAACCCCTACACGCCCGTTATGAATGGCTCCTCCTACCACGGGCTAAACCAGCCATCAGGGGTTGTGGCAGAGGGTCTTTCCTACCATGGGCTAAAACAACTGGGTGTTTCAGGGTTGGATAACTCTAGCTATCAGGGGTTAAACCAAGAAGTTGGTGTCTTGGGGGCGAACAGCTCCAGCTACACTGGACTAAACCAACAAGGTGTTTTAGGAGAGGACGGTTCCAGCTACCATAGCCTGAACCATTTAGGTGCTGTGGGGATGGTAGAGCCCAAAGTAGGATATGCTTGGCAGCACCTTAAAGCTGACTGCTTTCAGCCCAAAATCAACCACATTCACAAAGCTGTTCCACCTTTACTGGAGGCTCACCGAGCTCAGCTCGCCGGTGGAGGAGCAAGTGTCCCAGCTCCTCCTATGGGCCTGGACCCCTCCCTGGAGATGATCCACAGCCGTTTACAAAGAGACCCCCGTGGGAGCCGCTCTGACCCGCAGATGGATCATCTGCGGCGGGAGAGAGAATACCGGCTTGGCCGGCAGACCTCCAGCGAGCAGGAGATCCAGGCGCGACTTAACGAGCTCCCGCTGATTGTTAGGCAGGAACGCTACCGTCGAAGAATGGAGAGACAGTCGTCCAGTGAGCAGGAGGGCAGCGGTAGGCAGAGAGTACAGAAACATGACTCCAGCGATGCAGAGTCTGGGAAAGAGCCGTCTGACAAGAAACTATCTGGGGAGAAGCGTTCCACTATGGCTGAGATTGTTGAGCAAGTGCAGGAGAGAGAAGCTTGCCATGCGAAGGGAGAGGCGTACAGACCATCCAGTAGCCTCTCTGCACCAGTGAGCCGCCTGGATCGCCCTCGAGCTCGTGACCGCCCCAAACCACGGCGAAGACCTCGTCCAAAAGAACCCGAAGAGCCACGGAGGTCCCGTTCTGCACCTGCTCAGAGCGTCCCATCCACACCTCAGCCTCCTACCCACACTGTCAATCACGAGGGCTTCTTGTACAGGAAACACGAAGAGGAGGGGAAAGAAAGAAGCCCAAACAGCAAGTCGTGGGTTAATCTGTTCTGCGTGCTCAAACAAGGGGAGATTGGTTTCTACAAGGACGCACGACACAAGACCACACCCTACAACGATGAGCCACTTCTCAACCTGGCCATCTGCGAATTTGACACTACCAACGGATACAAAAAGAAGAAGAATGTCTTTATTCTCAGGACCACTGCTGAAGGGGACTACATCTTCCTGGCTAAGGACGAGGAGGATCTGAAAGGTTGGGTCAACAGTATCAACGCAAGTCTGAAAGAGATTGAGGAAATTGCCAAGTGGGAAAAAGCCACAAACTCCTCAACTGACCCTGATAAATCAGAGCGCAAGGAACGTTCTGAAGGGGCGGAGCCATTGGAGGGGGCGGAGAGATCAGAGAGCCCAACACATGCATACGCACATGCACAGTGCATCATGGGAAAATGTTCGGTATGGAACACCATTCTCTCACCTGAGGCCGCACACGTCTTCCACCTGCTGCTCATAGTAATGGTTTTAATCATGTGAGATGCTTCACAGTGCTGAGGTGAGTGTGATTCGGTCCAAAGTATACTCGAAGAAGTCTCAATCACAATACGTGAACATAATGTGGCAGTGTGTGTGTGTGTGTGTGTGTGAATACAGCTCCATCCAGAAAGAGCTCAAATGTACTATGTATAATCTCATTGATCGTATTTATTAGGTTATCGTGATTCGAATTTAAAGTGCAAGGTTATTCTTCCCTGAACTAAGAGGAAGTACGATCACCCCCCGTATGTGTACAAATATGCTGCTTTTTATCATCTCTGCCCCCTTACATCACTCTTTGATTGTAAAATTAGTACACATAAAATAGGGTGTCTGTGACTTTGTCATGCTATAAAGAAAAAGATTGTATATATATATATTTGTATATATACTAGTAAACGAGATTTACTTCTATGAACTGCAGCGTCTAATTACAAAAAAAATATATCATTTTTATCAACTTCTGAAAATGTAACAAGTTAAAAGTTGTTTTAAAGTCCCCCTGGCTGAATTTAGGTGGTAAACATGCGCGTTAGCCGCCGTTTCCAAGATCTCTTGCATATGGAAAGCAACTTTTACTGTTTACGGTTTGTTTTTTGGGCCAGGGAGAAAGATCAGGATCCTTGTAAAAAAAAAAAAGAAATCACCATTAAAATACTTTTGTGTTTAATTTAGATGTTAAGAGAACTGTTTCCTGACAGCAGTTGCAATTAATATTGACAAAGACAATGACTTTCCCCCTAAAATAGTTGAAATATATATGTGCAAATTATATTTACACAGATATGATACAAACAAAAATATCATAGTAAACAAGAATCGTTAATAAA

Function

GO:

id name namespace
GO:0005543 phospholipid binding molecular_function

KEGG:

id description
K06115 SPTB; spectrin beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01287752_01312897.mRNA True 5068 mRNA 0.51 21 1286922 1312897

Neighbor

gene id symbol gene type direction distance location
CI01000339_01242435_01246985 NA coding downstream 39937 1241131 ~ 1246985 (-)
CI01000339_01172551_01191348 SPOCK3 coding downstream 95574 1171336 ~ 1191348 (-)
CI01000339_01082705_01091230 LAS1L coding downstream 195692 1082643 ~ 1091230 (-)
CI01000339_01061363_01065408 ZC4H2.L, ZC4H2, HC127 coding downstream 220826 1060274 ~ 1066096 (-)
CI01000339_01039430_01047595 MTMR8 coding downstream 239327 1039146 ~ 1047595 (-)
CI01000339_01327907_01343305 GLRA3, GLRA4A, GLRA4B, GLRA4 coding upstream 14820 1327717 ~ 1344940 (-)
CI01000339_01346138_01360618 AIFM1 coding upstream 32845 1345742 ~ 1360618 (-)
CI01000339_01373395_01377800 NA coding upstream 60498 1373395 ~ 1377800 (-)
CI01000339_01385481_01386022 NA coding upstream 72134 1384306 ~ 1386094 (-)
CI01000339_01394345_01398989 NA coding upstream 81345 1394242 ~ 1398989 (-)
G481163 NA non-coding downstream 146880 1138563 ~ 1140042 (-)
G481272 NA non-coding downstream 228598 1056645 ~ 1058324 (-)
G481266 NA non-coding downstream 324434 961751 ~ 962488 (-)
G481261 NA non-coding downstream 365196 921375 ~ 921726 (-)
G481253 NA non-coding downstream 395747 890944 ~ 891175 (-)
G481576 NA non-coding upstream 4710 1317607 ~ 1317886 (-)
G481557 NA non-coding upstream 9470 1322367 ~ 1326907 (-)
G481578 NA non-coding upstream 15770 1328667 ~ 1328867 (-)
G481588 NA non-coding upstream 54050 1366947 ~ 1367223 (-)
G481589 NA non-coding upstream 55469 1368366 ~ 1368577 (-)
G481157 NA other downstream 170774 1114129 ~ 1116148 (-)
CI01000339_00932339_00951205 SMARCA1 other downstream 333488 931680 ~ 951205 (-)
G480969 NA other downstream 1196725 85093 ~ 90197 (-)
G481610 NA other upstream 258640 1571537 ~ 1573962 (-)
G481662 NA other upstream 410873 1723770 ~ 1733019 (-)
CI01000339_01988812_02024891 NA other upstream 676278 1988537 ~ 2025183 (-)
G483104 NA other upstream 2081211 3394108 ~ 3401228 (-)
G483199 NA other upstream 2464994 3777891 ~ 3778551 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031000 sptbn4a coding NC_007116.7 CM002889.2 22465086 ~ 22501663 (-)