XLOC_000237 (ptpn9b)


Basic Information

Item Value
gene id XLOC_000237
gene name ptpn9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19094548 ~ 19112934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000391
CGCCCGTAGACGTTGCTGCTCAGGCTTCAAGATGGCGGAAGCCCTGACAAATCAAGAGGCGgCAGTGGAGGAGTTCCTGGCTGAGCTGAGGTGTCGGGAACAGTCTCAAAATGCAGATCTCGTCAGTCAGATGACAGCGGTTAAGTTCCTCATGGCAAGAAAGTTTGATGTCTCTAGAGCCATAGATCTTTTTCAAGCTTATAAGAACACCAGAATAAAGGAAGGCATTTACAATATTAACCCCAATGAGGAGCCTTTAAGGAGCGAGTTACTCAGTGGGAAATTCACAGTTCTGCCCGGTCGTGATGCGAAAGGTGCAGCTTTGGCTCTTTTTACAGCACGTCTCCATCAGCCAGACCGCACTACCCATAAAGCTGTTCTTCAGGCCATTATATATCAGCTGGATAAGGCTAttgagagTGTTCAGACTCAGAGGGACGGGCTCATTTTCATCTATGACATGACTAACTCCACATATGCCAACTTTGACTATGAGCTTTGCGTCAAGATTTTGAATCTGCTTAAAGGGGCTTTCCCTGCTCGTCTGAAATGCGTCTTCATTGTGTCGTCTCCGCTGTGGTTCAGAGCACCGTTTGCGGTACTCCGTCTGTTTGTGAGAGAGAAACTGAGAGAGAGGGTATGCACTGTAAAAGCCCATGAACTGGTCAATCACATCCCAGTCAGCTCCCTTCCAGAACATTTGGGTGGCTCATCACAGTATAGCCACATTGCCTGGATTCAATCCTGCGTCAACTCCAGCCCCAATCACCCCAATAACTCTGCATACGTCACTGGGGATTGCTTGGGGAGTCTGCTCTGCTCCTACTCCATGGAGCACGACCAGAACACCTCTGCTGACCCCTTAACTGCCAAAACGTCAGGGGCCACCTTCCTGGGGGACGGCCTGAACTCAAACTGCCCCATTTTGGACGAAAACAATGCCAATGTGCCGAACCACAGAATGACAGGCCATGCGCATTGGAACGGCTCTGCACTGCCAAGTTTAGGGTCGAATGCCAATGTCTTAAATGGGCGTGGCCGTCAACCGCCCCCACAATCAGACACCCCCCCAGACACGCCCCTGCACCAAAAACACACAGCAGGAGGTGGGATTTTAGGTGTAGGAGGAGCGTGTTTAGATGCCAGTCGGCAGGATGGCAATGGTGCTGAGGAGAGTCAACAGGATGTGGAGTTACTAGAAGACGAAATGGGTGAAGGAGATGGAGTTCCACCTCTCCCACTGAAATCAAGGCCACCACCCTTAAATCACAGCCCCACCCCAGATATGAGCTGGCTACCAGGAACGCTGACGGAAACAACCATGTTGTCAGTTCATGTCGCTGAGCCTGGAGGAATGAGTGTGCAGGATCTGGTGCAGCACGTCAAGCGCAAAAAGAAGAAGGGCATTTATCAGGAGTACGAGGAGATCCGCAAAGAGCCTCCTGCTGGAACCTTTGATTATTCAAAGAAAGCGTCTAACCAGATAAAGAATCGCTACAGTGATGTGCTTTGCCTTGATCAATCTCGTGTTCACCTATGTCCGCTcaatgatgaggatgatgagACATCTGACTATATCAATGCTAGTTTCATGGATGGTTACAAGTGGAGTAATGCTTACATAGCTACTCAGGggCCTTTGCCAAAAACATTTGGAGACTTTTGGCGGATGGTGTGGGAGCAAATGGTTTTAATCATTGTTATGACTACAAGAGTTGTAGAGCGAGGCAGAGTAAAATGTGGGCAGTACTGGCCATTAGAGGCTGGTCGCACTGAGGAGTATGGGTACTTTTTGGTGAGAAATGTCCATATTGAGGTGTTTCAGGACTTCAAGCTATCACACCTGGAGCTGTTCAACACTCAGACAGGGGAATGTAGGGAAGTGTCTCATTATCTCTACATGAGCTGGCCAGATTTTGGTGTTCCGAAATCAGCATCGGCCATGTTGGATTTCCGGGCACACGTGAAACATAGACAGGAGTCCTCATTACGAACACTGTATCCAGATTGGACGGGACCCCCAGGAGGCCCCCCAGTGGTGGTGCATTGCAGTGCAGGCATCGGCCGAACAGGCACGTTTTGTACTTTAGACATTTGTCTCTCTCGTCTGGAGGACATCGGGACAGTGGACATTAAGCAGACGGTGCGTCGCATGCGGACACAGCGTGCCTTCAGCATCCAAACATGGGACCAGTACTATTTCTGTTATAAAGCGGTGATCGAGTATGGCCAGCAAAGCGGTCTGCTGCAACCAGTGGAGTGGTCCGACACAGAGCTGGAGACTGACAGCGAGTGAATCAGGAATAACAGGACTCAACGGCACGGAAGGAAAACAAGCCGTCTTTTCCCCTCTCCAGGCTACAGGTAGACTCCACCGTCACCTCTTTTCTCCAGAGGAACATGCGGAGATACTGAAAGAGGAGCGGAGGATGCTTTTATCCTGCCACTTTTAAAGCCCTTTTATTTTACTCAGATCTGAACCAGATCCAAGACTGTGGCTTTGTGTACGAGTTGTAGCATTTTATTTTcgtttcgtttgtttgttttacttttttatataaa

Function

symbol description
ptpn9b Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Is expressed in brain and somite. Orthologous to human PTPN9 (protein tyrosine phosphatase non-receptor type 9).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-52 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Is expressed in brain and somite. Orthologous to human PTPN9 (protein tyrosine phosphatase non-receptor type 9).

Ensembl:

ensembl_id ENSDARG00000073902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000391 True 2562 mRNA 0.49 13 19094548 19112934

Neighbor

gene id symbol gene type direction distance location
XLOC_000236 exosc9 coding upstream 2393 19083501 ~ 19092155 (+)
XLOC_000235 limch1a coding upstream 28221 18965750 ~ 19066327 (+)
XLOC_000234 rnf38 coding upstream 160877 18863060 ~ 18933671 (+)
XLOC_000233 NA coding upstream 261105 18829172 ~ 18833443 (+)
XLOC_000232 slc25a51a coding upstream 277742 18811679 ~ 18816806 (+)
XLOC_000238 NA coding downstream 263 19113197 ~ 19159285 (+)
XLOC_000239 NA coding downstream 140093 19253027 ~ 19264970 (+)
XLOC_000240 si:dkeyp-118a3.2 coding downstream 190307 19303241 ~ 19331532 (+)
XLOC_000241 tyrp1b coding downstream 219903 19332837 ~ 19346048 (+)
XLOC_000242 clockb coding downstream 320070 19433004 ~ 19466453 (+)
XLOC_000230 NA non-coding upstream 730677 18355746 ~ 18363871 (+)
XLOC_000228 NA non-coding upstream 925448 18165117 ~ 18169100 (+)
XLOC_000227 NA non-coding upstream 1124264 17966114 ~ 17970284 (+)
XLOC_000224 CR774194.1 non-coding upstream 1232620 17858380 ~ 17861928 (+)
XLOC_000247 BX323590.2 non-coding downstream 592765 19705699 ~ 19705832 (+)
XLOC_000250 NA non-coding downstream 695507 19808441 ~ 19821195 (+)
XLOC_000253 NA non-coding downstream 910998 20023932 ~ 20027926 (+)

Expression


Co-expression Network