RNA id: TCONS_00000364


Basic Information

Item Value
RNA id TCONS_00000364
length 633
RNA type processed_transcript
GC content 0.48
exon number 6
gene id XLOC_000215
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16548733 ~ 16619858 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAGCAAAGTAGTTGAAGATTGTTGGGTTGTGTGACGGGTAAGGGAGAGGAGAGAGAAGGAGCGGGAGTTTGAGGAGAACATGGGCTCCACCGGGAGCAAACCTGGATTGAAGAAACCTCTGGTAAACAAGAAGAGTCAAAAGCGCGAGTCGGCAATCAAACAGAGGGAAGAACTTTCTGTCCAAATCAACAACCTGCGAGAGCAACTGAGTAACTCTGTCTCATGTTGCGAGCAGTTGGAGAAAGAGAAGGAGGAGGTCCGTGTGACTTTGGAGGCTCTGTTTCAGAAACTCCAGGAGCAGCATCAGTCTGAACTGCAGCAACTGGAGGAGAGACTGAAGGACTTCTACTCTGCAGAATGGGACAAAACCCACGAGGCCTATCAGAGAGAGGCGGATAAATGCAGGGTGCTCATGCAGCAGCAGGTGGAGGATGTGAGGTACAAACAAGAAGCACTGAGGAAGCAGCAGGAAGCGGCACACACTGAGCAAATAGCAACACTGAAACATGAACATGAGACTTCACTCACAGAGCTGTGCTGGAAATAAAGACCAACCAGATACACCAGAAAGACAAGAAACTCATGCAGATGGACAAACTGATAGATGATAACTTGAAACTGGAAGAGTGT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070619-5 Predicted to be located in nucleus. Orthologous to human MTUS1 (microtubule associated scaffold protein 1).

Ensembl:

ensembl_id ENSDART00000171166

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003051 lncRNA upstream 25769 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 1164373 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 1527034 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 1579276 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 1830044 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003052 lncRNA downstream 57500 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 1294470 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 1351525 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 1351525 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 1352322 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00000358 mRNA upstream 120485 16463079 ~ 16480213 (+) False XLOC_000214
TCONS_00000359 mRNA upstream 130351 16466771 ~ 16470347 (+) True XLOC_000214
TCONS_00000355 mRNA upstream 142441 16396870 ~ 16458257 (+) False XLOC_000212
TCONS_00000356 mRNA upstream 144197 16397063 ~ 16456501 (+) True XLOC_000212
TCONS_00000354 mRNA upstream 144777 16396870 ~ 16455921 (+) False XLOC_000212
TCONS_00000365 mRNA downstream 6756 16621345 ~ 16654161 (+) False XLOC_000216
TCONS_00000366 mRNA downstream 11089 16625678 ~ 16653461 (+) True XLOC_000216
TCONS_00000368 mRNA downstream 762333 17376922 ~ 17524922 (+) False XLOC_000219
TCONS_00000370 mRNA downstream 912753 17527342 ~ 17531542 (+) False XLOC_000220
TCONS_00000371 mRNA downstream 912789 17527378 ~ 17531527 (+) False XLOC_000220
TCONS_00000357 other upstream 141957 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 438478 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000343 other upstream 1833028 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 1855959 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 1863134 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000367 other downstream 154094 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 898926 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000377 other downstream 1243791 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000400 other downstream 2920531 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 3091110 19705699 ~ 19705832 (+) True XLOC_000247

Expression Profile

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