RNA id: TCONS_00000356


Basic Information

Item Value
RNA id TCONS_00000356
length 2929
RNA type mRNA
GC content 0.38
exon number 12
gene id XLOC_000212
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16396870 ~ 16458257 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCAACAATAATGGCCGCTGTGCGCAGAGTCATATTTAAGAGTTTGTCGCTCTCTTTAGCTGCACGGAACGCGCTTTTTCGCTCTCCGGTGAAGGATAAACGATGCACACGCACAGGACTAGCAGTTGCAGTGGGCGTCGCGGCCGGAGGAGCggtgttgtattattattattcagaaatGTGCGGATTTGGAGGGAGGAAAGCCCCGATAAACCGAACAGTCTGTCGGGCTCTGCTGCCTTCACTGCCCGCTGTAGCCGCAAAGGAGAAGGCTCCAGTGTTTGATTTTGATGAAACTGACGTGTACATGTCGTCCCATGAGCATCGTTTCCGTCTCTTCAGCTCAGTGGAGTATGAGGGACAGCTGTATATGACTCCTCAAAACTTCATTGAGTCTGTCACCATGAGTGAGCCTCGCATCAAGAAACCGTGGAGGTCCCTCACCAAACAGGAGTTGGAGAAGATCTTGTCTGATACTCCACCAGTGTGGAAAGGAACATCCAAGCTGTTCAGGAACCTTCGAGAACGAGGCATCATCGCTTACACCGAGTATCTCTTTCTGCTCTGCATTCTGACAAAACCTCATGCTGGTTTTAAAATTGCCTTTAACATGTTTGACGCTGATGGTAACCAGATGGTGGATAAACGAGAATTTATGGTGTTGCAAGAAATCTTCAGAAAGAAAAACGAGAAAAAGGGAAGGAAAGGAGATGCTGAGAAATCTGCTCAACTTCGTGCCGATGAGAACATGATGATTGACACCACTCTGCTTGTGCACTTCTTTGGCAAGAAGGGGAAGGCGGAGCTAACGTTTGACGACTTTTACAGATTCATGGATAATCTGCAAACTGAGATGTTGGAGATTGAGTTCCTGACCTATTCCAAAGGCATGACTACCATCAGCGAGGAGGACTTTGCAAGAATCTTACTGCGCTATACTAATGTAGAGGACATCCGCAGCTATCTGGAGAACGTGCGTCAGTGCATACCTGACGAGAAGGGCATCACCTTCGAGGAGTTCAGGTCTTTCTTTCAGTTTCTTAATAATCTGGAAGACTTCGCCATTGCCATGCAGATGTACAACTTTGCCTGCCGTTCCATTGGACAAGatgagtTTGCTCGGGCTGTGTATGTGGCAACAGGCCTTAAGCTGACCCGACACCTGGTTAACACCATCTTCAAGATATTTGATGTTGATCATGATGATCAGCTCAGTTACAAAGAGTTTATAGGTATCATGAAGGACCGGCTGCACCGTGGAGGCAGAGGCTATAAATCTGTTGAGCGCTTTACTTCTTTTAGATCATGTCTGAAGAAGGAACTGGCTAGCAGATAAGTATCCAAGTAATCCTTTATTTTGAAATCCCACCAAATTAAATATTGACAATTCATTTACTTAACTTTGATTGTTCATAAAGATTATGCAAGCATAAAGAACATTAAATTCTTATCTAGATATATACCGTAAAACAAATACCAGTTGGCAGTTCatactgctgtggcgactcctgataaatcagggactaagccaaagggaaatgaatgaatgaatgttttaatagCTTAGTGTTTAGACAAATGAACACATTAACATTTTTAGCTATACGtagacccacacggaatctgtgtgcacagaaatccacagatttttagcctatcattgagtctgtttatttacttgtgtaaacgtgtgcacatttattttaatcagtttttatattGATTCCAGcagtattattgactaatatgaaaatctttacatgatttatttacaatacagtttgtaatgtaatattttctgtcttttagtagttatattatttaaaagaCTTGCTTTggttaccaaataagtggatctaattagatttgcattgtaaatattaaataaaagttttaaagtattattttttatttaatatattaagtttttatttattacactCCCAAAATGTCTCCATTTAAAtccatagatttatttattttttctcttgcagaaatagcaaaaaatatacacagattttgtctggccctagCTATAAGTCCAACATTGTCTCTAATACTAAACCCAATATTGTATATGAATAGAATTTTAATATATCAACTTTTTTAAAACTTATCTCTACCAATCAAGTAGTGCCTTTAAAGTAGTGATATATTAATAATTCAGTTTAGATGTTGTTGCTAATGTGTTTTGCTGAAAACTTgtgctaaaataaaacattgctaATGCCAAAATGTTGAACTCTCTGAACGCTTATACTAGAAAAAGATTTGTTTAATATCTGATGACTGAGcgagtaaatatttgaaaaataaagttAATGATCTTTTTTGATTTGCACCAGGTGAACAAGGAACTTAATTTCTCTttcctctgaaaaaaaaaagcgcTGATAATAATCTGCTGTGGAAATATTGGAGAGAAAGCAAAGCGCTCAAGATTTCACCGTGAGATCTACCTCTTCCTTTTCTGAGCTCCAAACCTCTGAGAAGCCGGATTGGGATCGACGCTCTGCACTGCATGTTCTCGCATCTGCGCAGCTCTGCATGATCAAACTTCATTCTATAATCTGATATTTATCTAGTATGCATGCTGCCCGGAGAAAAACACATCTATCTGAAGTTCAGTTGGTGCAATATCAAATTTTTAAGTCATACAGTTGCACGTATGTGTCCAGACAGTGTAAAGATTATTTTTATGAAGATTTAAGCAGCTTAAATTTCTCATTTTAGACTTTTATTGATTCAATTtagtcatctttatttctatagcgctctGTCAAAGCAGCTTTGGAAAATAATTATATGATATGATTATAATGTACTATTCAAttatgtttgttttggtttttcgtTGTTTTCTATCAGGGTTGATTATATATACCGAATCATACTGTGTGTGAAGAGTGATATTTTTCAGTATATGGGT

Function

GO:

id name namespace
GO:0051560 mitochondrial calcium ion homeostasis biological_process
GO:0036444 calcium import into the mitochondrion biological_process
GO:0006851 mitochondrial calcium ion transmembrane transport biological_process
GO:1990246 uniplex complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070713-1 Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and mitochondrial calcium ion homeostasis. Predicted to act upstream of or within mitochondrial calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of uniplex complex. Orthologous to human MICU3 (mitochondrial calcium uptake family member 3).

Ensembl:

ensembl_id ENSDART00000159794

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003050 lncRNA upstream 960738 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 1323399 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 1375641 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 1626409 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003051 lncRNA downstream 117465 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 215588 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 1452558 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 1509613 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 1509613 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000352 mRNA upstream 176828 16144615 ~ 16220235 (+) True XLOC_000210
TCONS_00000350 mRNA upstream 176829 16073887 ~ 16220234 (+) False XLOC_000210
TCONS_00000351 mRNA upstream 176937 16127825 ~ 16220126 (+) False XLOC_000210
TCONS_00000349 mRNA upstream 1111608 15258641 ~ 15285455 (+) True XLOC_000208
TCONS_00000348 mRNA upstream 1139748 15226268 ~ 15257315 (+) True XLOC_000207
TCONS_00000358 mRNA downstream 6578 16463079 ~ 16480213 (+) False XLOC_000214
TCONS_00000359 mRNA downstream 10270 16466771 ~ 16470347 (+) True XLOC_000214
TCONS_00000360 mRNA downstream 92232 16548733 ~ 16617741 (+) False XLOC_000215
TCONS_00000361 mRNA downstream 117481 16573982 ~ 16612144 (+) False XLOC_000215
TCONS_00000362 mRNA downstream 117811 16574312 ~ 16619858 (+) False XLOC_000215
TCONS_00000353 other upstream 234843 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000343 other upstream 1629393 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 1652324 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 1659499 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000340 other upstream 1666673 14730296 ~ 14730390 (+) True XLOC_000198
TCONS_00000357 other downstream 2024 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000364 other downstream 144197 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 312182 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 1057014 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000377 other downstream 1401879 17858380 ~ 17861928 (+) True XLOC_000224

Expression Profile

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