Fish Transcriptome and Expression Database

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model fish

XLOC_000199 (CU138548.4)

Basic Information

Item	Value
gene id	XLOC_000199
gene name	CU138548.4
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	14737470 ~ 14737564 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000341
caggttctctggcttgacgtcccggtgcaggactccgcggctctcgcagtgtttcagagccgcgatcagctgcaccagcactttcttggccagac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111723

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000341	True	95	miRNA	0.62	1	14737470	14737564

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000198	CU138548.3	coding	upstream	7080	14730296 ~ 14730390 (+)
XLOC_000197	CU138548.2	coding	upstream	14220	14723156 ~ 14723250 (+)
XLOC_000196	CU138548.9	coding	upstream	21360	14716016 ~ 14716110 (+)
XLOC_000195	CU138548.8	coding	upstream	28500	14708876 ~ 14708970 (+)
XLOC_000194	CU138548.1	coding	upstream	35640	14701736 ~ 14701830 (+)
XLOC_000200	CU138548.7	coding	downstream	7081	14744645 ~ 14744739 (+)
XLOC_000201	CU138548.6	coding	downstream	30012	14767576 ~ 14767670 (+)
XLOC_000202	NA	coding	downstream	31937	14769501 ~ 14770654 (+)
XLOC_000203	NA	coding	downstream	114058	14851622 ~ 15021422 (+)
XLOC_000204	NA	coding	downstream	335836	15073400 ~ 15073664 (+)

Expression

Co-expression Network