XLOC_000207 (hgsnat)


Basic Information

Item Value
gene id XLOC_000207
gene name hgsnat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 15226268 ~ 15257315 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000348
TGTTTTTGAATCACTTCCTATGAAAAGCCTGTGTGTACTTTGACCCTCCTCTCTTCCACTACTTGTGCTAGGAGGAATCGGAAGTATGTTGTTATGAAAAAAGGGAAAATCTGTACATCAAGAAAGGATCGAAAGGAGGAGGCAGCGAGATCTGATGCTATGGCATCTGAAAGGGAGAACAGATGGACCATTTGTGCTGTGATTGTGTTTTTGATAGCAATATGTGCAGCTCATATGACAGATCGACCTGCCTCTTCTCGCCCTCACCGCAAGACTTCTGTGCTGAAGATGGATGAAGCGGCTCTTTCGGTTATCAATGAGGTCGAGGAGGAGATGGTGCTTTATGTGCTTTCTGATCACTGTTATCAGTGTTTGCCTCAGCCGTTGGGAATGATACCTGCAAGGCCCACTTCTGGAACCCCTGCTTCAGTGGGATTTGTCGTAGGCACACAGCACGCTCTGACACTGTTGATCAACAGCACAACAACGCCGCAGCAATGCAAGGTAAATTTCCACTTTGGGGAGCAGGGGAACTATTCTCTGTGGGTGAAGAACCTGAATGAGCCGTCACAGATCAACTGCGAAATGATCACTGATTCAGATCCCATCAACAGCTACCTGCctaTTCTGTTTGCTTTTCTGGTGTTTGCTTTTCTGGCTGCATTATCAGCAATCTGGAGCACAGTTAAAAGGCTGGATGCTGTGACAAATCTACTTATTCGCTTGGGGGGAACAGTTGAGACAGAGAGGCTGATAAACTCGGAGCTTGGCACTCCAAACAGATTGGTAGATGCCTCCACGGAATCGATAATTCCTGCCACTACAGGACGGAGGCTTCGTTCTTTGGATACTTTCCGTGGCCTTTCACTGGTCATCATGGTGTTTGTCAACTACGGAGGTGGACGTTACTGGTTTTTTAGGCATGAAAGTTGGAATgGGCTCACAGTTGCTGATCTCGTGTTCCCTTGGTTTGTGTTCATTATGGGTACATCCATTGGTTTGTCCCTGAGCGGTTCATTGCGCAGGGGTGTCAAACGCACTCATCTTCTGTGGAAGGTTTTCTGGAGGAGCTTACAACTCTTCCTTATCGGAGTCATCATCATCAATCCTAACTATTGCCAAGGACCCTTGTCTTGGGATTCTCTGCGTATTCCTGGTGTATTACAGCGTCTGGGCTTTACGTATCTCATCGTCGCTGCTTTGGATCTTGCTGTGTCCCCAGACCGACTTACCAACCTGTCAAGTGAAACATGCTGGTATTGGGTGCATGATATCTGCCTCTACTGGCCCGCATGGTTGTGTGTGATTATCCTCGAGACGGTCTGGCTGTGTTTGACCTTCCTCCTCCCAGTGCCTGGCTGCCCAACTGGTTATCTGGGTCCAGGGGGCATTGGGGACTTTGGCCAGTACCAGAACTGCACCGGTGGAGCTGCGGGTTACATCGATCGCTGGCTGCTCAAAGATAATCATATTTACCAGACACCTTCATCACGGGTTTTATACTTGACTACGATGCCCTTTGACCCTGAGGGTGTTCTGGGAAGCATCAACTCCATATTGATGGCTTTTTTAGGTCTTCAGGCAGGGAAAATTCTGCTGCATTACAGGGACCAACACAGGCAAATAATCACAAGATTTCTCATGTGGGGATTGATACTGGGGATCATCTCAGCTGTATTGACCAAGTGCTCCAGAAATGATGGCTTCATCCCTGTCAATAAAAACCTGTGGTCTTTGTCGTATGTGACCACTCTCAGCTGTTTTGCTTTTGTGGCTCTGGTGTTTTTTTACTACACTGTGGATGTAAAGAAGTGGTGGTCTGGAGCTCCCTTCTTCTACCCTGGTATGAATTCCATCTTGGTGTATGTGGGTCATGAAGTGtttgaggaatatttcccatTTCGCTGGAAAATGgccaacagccaatcacacacaGAGCACCTGGCACAAAACCTGCTGGCCACCTCCATATGGGTGTTCATAGCCTTCCTGCTCTACAGGAAGAAGATCTTCTGGAAGATTTGAAGGTGAAATTCCTGTTCTGCTGAACTTAAGACCGGTTCATCtttgtgaaaaaaaattttttttttttttgggtgccTATTTTTAGATGTAGAAAAATCAGCAGATCTCTGAACATCTGTgcagagacaaaaaaaaactcacacaTGGTCCAGGAATAGAACTTGGCTATTATTTGAGAAGAGCAGAAGGAAGAAGAGGAAAGAAGAGCATGTGGCTGTGCCAGTATGTACCTCTGTGGACTCAACTAAGCCCTTAGAATGAATGCCAAGATGCTAAGGGCAGATTCTGCCAAATTTCCCATTCAGGCTATTGGTTTGAGGgtaattaataatgttttgaagCAGAGCGAGGCATTATGTTTGATTATGAAATCAGCTCCTAAATGATGATATTGGACAGTTCTGAAAGTCTAATTTGATTAATATAGTCATGAATCTGAAAGCAAATGAGTGAGATAAACAAAGTCttccttcactgtaaaaaaagcagggttccacatcattccttcatgttgccacaacacaaatcaatcaagctaacttaattgttttataaatttaagtgggttaaacataaaacaaataagttgtcccaaaaaaaccttaagaattgtgttgtttcaatttatttaaatatatagcttaaaaagaaaaaaaggagcaAAAATCTTTCTAttctatattgtaaataatgattAGCTAATTAAAGCAAGTAAACTGATTGCCTTAAAAGCGACAAGCTGACTtcactaaaataaagtaaacccattgtaacttggaactgttaagttggcttaatttttataattatgctaattgtactctttttttttttttaaataaaagtaaactaatcaccTTTTTCCAATACACCGTTACTGGTTAAACTTAGGACCaaggaggaacaatgcggttttcgtccaggccgtggtacactggaccagctctaaaCCCTCACTAGAGTGCTCAAGGGTTCGTGGGATTATGCCCAACCAGTCTACATGTGTTTAATGGACTTGGAGAAAGTATTCGACCATGgccctcgtggcattctgtggagggtgctctggtagtatggggtcagaggcgctctgttaaAGCTGCGTCTCGTCACCTGTATGAACATTGTAGGAGTTTGCTTCACATTGCCGGCagtaagtcagacttgtttccagtgcatgttggactcggGCAGAGCTGCCCTTTgacaccaattctgttcataatttttatggacagaattttaaGGAGCACCCTTGGGCTGGAGGGGTCCGGTTCGAGGACCACATGATTTCATCTCTGTTAactgcagatgatgttgttctgttagcttcatcgaacatggaccttcagcatgcactggggcggtttgctttCAAGTGTGATGCAGTTGGGataagaatcagcacctccaagtccgaggacATGGTGCTCCACTATAAAAAGGTCCAGGTTAGAAGAGAGTCCTTAGCCccggtggaggagttcaagtgtgttggggttttgttcacgagtgagggaagggtGTAACGTGAGGTTAAAAGGTCGATGTactggtccattgtggtaaagaaggagccgagccgaaaggcaaagctcttgatttactggtcaatctacgttcctactctcacctatggtcatgagctttggatcatgaccgaagagacaagatctcagatacaagctgcaattgcagggtggcagggtgcacccttatagatagcatctgtttcagatgcctcttgGGCGCCTGCCTGTGTATActcctatattattatttatttattattttttaaatttatttcttgcttttctgtatctagcaaaatgacatacagtaaaataaatctgctctttcAGTGTGTGTTCTATATTAAATTCAGGTTATAATTatagattttatagacttaatgaagcaccaaatatttaaaaacagaccAGCTtaaatagtctgacactgtaaaaagggattagttgacttaaaaaagtaaatacaactagcataattataaaagttaagtcaacttaacagttccaagttacaatttttgtaaagtcaacttgttgcttttagggCAATTgatttaagctgcggtcacactagagtttgtgtgtgtgaaattctaGTGTACGGCGTTgcaaaaaggggcaggattaaacaagattattagacattcaaaaagggagcgattgctccatgttttaaatttctgtccagagaggtcatgttttgatcctcgattggtctcacgcagtcaagtgatgcgatttcgcaggtcagagttcaccaagcttgaactttgcactgcagcgaTCTGCGAGACTGaatgcatgaccctgcgtttccggtctgacgcattcgctaGCTTATGAATGGATGTCTACGGGGAGAAAAGTcaaatgtgaccgcagctttacttgCTTttagtaactaatcactttttacagtgcaggtctGAAAAATCTGCTGAATTATCTAATAGTAATGTATAATGATATTATACAGTCAGTTTTaggtttcatttttaatataacGTAAGCTCTGGGATTGTGTTGTTATACTTTTTGATTTTCAATGGCCTCtgcctttattaattttttgtactGTGGTTTCATTCTTTATAGCTTAAGATGAAAGTATTATGGTTAAAGAAGGAGTGTCTTGCTGTTTCAAAAACTCAGGAGATTTGCACAATGTTTGAGTGTCAAATACAATGCTTTCTCTGATAAAACAAGGTCCTTTTTTGCAGTTTACCAGTAACCTGTTACCTCTACCATGTACAGCAAATGTTAAATAAAGTATATTAAGATACTCATCACGGACACATACTGTACGCATTgctgcttgaaaaaaaaaaaattgtttcaagGTGAAGGGAAAATATTGATCCAACATATTTGTTGCCAACTCGCAAAGTCAATTTCATCTTTGTGATGGATAATTGAAATTTCTGAGATGCATGAACAACATTtctttgtgtatatttttgtttttatactcTTCAACATGAGATGTGGTGAAAATAAACCCTTTTTTTACCATTATATCTCATCTTTTTCTTTTGATCATGACATTGATGAGCGGAGCGGATCATGGAACCAGGAGTCTCATCCTGGCTTTCTATGGGTTTATTTTAAAAGGAGACATGTTTGAAAGCAGAGTGCAATTATAATGGACAATTGTATAAATTctacactcaccgaccacttttttaggtacaccttattagtaccgggttggacccactcttgccttcagaactgccttaatgctttgtggcatagattcaacaaggtactggaaatattaatCTGAGACTTTgctccacattgacatgatagcatcacacagttgcttcagatttgtaggctgcacatccatattctgaatctcccgttccaccacatctcaaaagAGCtcttgaattgagatctggtgactgtggaggccatttaagtacagtaaactcattgtcgtgttcaagaaatcagtctaagatgatttacactttattacatggcgcgttatcctgctggaagtagccatctgcTTTCGCTacagcatgatcgcctcacagcaacaagttGGCTGGCTTGAGCAGTTACATTTTCTGtccggagtttgcatgttctccttgtgtttgcgtgggtttcctccgggtggtccggtttcacccacactccaaagacatgcgctataggggaattgaataagttaaattggccgtagtgtatgtgtgtgaatgtaagagtgtatgggtgtttcccagtgttgggttgcagatggaagggcatctgctgcgtaaaacatatgctggataagttggcggtttattccactgtggcgaccctagattgataaagggactaagccgaaaagaaaatgaatgaatgaatttctctAGATTTCTGATTTGACTTTAAACCCAGTATTGCTTATAGATTATGGAGGAggaaaacctgcaaaaacaataaataaataaataaatacgcacaatatacaaataaattagtaaataaattcattcatcc

Function

symbol description
hgsnat Predicted to enable heparan-alpha-glucosaminide N-acetyltransferase activity. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015019 heparan-alpha-glucosaminide N-acetyltransferase activity molecular_function

KEGG:

id description
ko00531 Glycosaminoglycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-140106-144 Predicted to enable heparan-alpha-glucosaminide N-acetyltransferase activity. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

Ensembl:

ensembl_id ENSDARG00000077804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000348 True 6059 mRNA 0.41 18 15226268 15257315

Neighbor

gene id symbol gene type direction distance location
XLOC_000206 itln1 coding upstream 1930 15204633 ~ 15224338 (+)
XLOC_000205 pcdh7a coding upstream 22911 15137901 ~ 15203357 (+)
XLOC_000204 NA coding upstream 152604 15073400 ~ 15073664 (+)
XLOC_000203 NA coding upstream 204846 14851622 ~ 15021422 (+)
XLOC_000202 NA coding upstream 455614 14769501 ~ 14770654 (+)
XLOC_000208 pi4k2b coding downstream 1326 15258641 ~ 15285455 (+)
XLOC_000209 NA coding downstream 164911 15422226 ~ 15436325 (+)
XLOC_000210 tusc3 coding downstream 816572 16073887 ~ 16220235 (+)
XLOC_000211 CU633160.1 coding downstream 904789 16162104 ~ 16162220 (+)
XLOC_000212 micu3a coding downstream 1139555 16396870 ~ 16458257 (+)
XLOC_000201 CU138548.6 non-coding upstream 458598 14767576 ~ 14767670 (+)
XLOC_000200 CU138548.7 non-coding upstream 481529 14744645 ~ 14744739 (+)
XLOC_000213 CT573256.2 non-coding downstream 1201210 16458525 ~ 16458741 (+)
XLOC_000217 NA non-coding downstream 1414774 16672089 ~ 16674126 (+)
XLOC_000218 CR377220.1 non-coding downstream 1511368 16768683 ~ 16768809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_04443587_04462530 HGSNAT coding CI01000300 null 4443587 ~ 4462719 (+)