XLOC_000212 (micu3a)


Basic Information

Item Value
gene id XLOC_000212
gene name micu3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16396870 ~ 16458257 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000354
CATGTGCGCTGGCAAGCGTTTTCATTTATCCGGAGTGCGTAAACGTGCGCATTTTTCACATGTATGTTTACGAGCAGCGCACAGATGCGTGCAGGACCTGCTGCTGCTCCGTTCAGGGTGATCCCGGAGAGGGAGCAGCAACATCTCGCGATGAATGCATGAGAATTCGAGAATATTGTGCAAATTCTGTCATACCAACAATAATGGCCGCTGTGCGCAGAGTCATATTTAAGAGTTTGTCGCTCTCTTTAGCTGCACGGAACGCGCTTTTTCGCTCTCCGGTGAAGGATAAACGATGCACACGCACAGGACTAGCAGTTGCAGTGGGCGTCGCGGCCGGAGGAGCggtgttgtattattattattcagaaatGTGCGGATTTGGAGGGAGGAAAGCCCCGATAAACCGAACAGTCTGTCGGGCTCTGCTGCCTTCACTGCCCGCTGTAGCCGCAAAGGAGAAGGCTCCAGTGTTTGATTTTGATGAAACTGACGTGTACATGTCGTCCCATGAGCATCGTTTCCGTCTCTTCAGCTCAGTGGAGTATGAGGGACAGCTGTATATGACTCCTCAAAACTTCATTGAGTCTGTCACCATGAGTGAGCCTCGCATCAAGAAACCGTGGAGGTCCCTCACCAAACAGGAGTTGGAGAAGATCTTGTCTGATACTCCACCAGTGTGGAAAGGAACATCCAAGCTGTTCAGGAACCTTCGAGAACGAGGCATCATCGCTTACACCGAGTATCTCTTTCTGCTCTGCATTCTGACAAAACCTCATGCTGGTTTTAAAATTGCCTTTAACATGTTTGACGCTGATGGTAACCAGATGGTGGATAAACGAGAATTTATGGTGTTGCAAGAAATCTTCAGAAAGAAAAACGAGAAAAAGGGAAGGAAAGGAGATGCTGAGAAATCTGCTCAACTTAGTATGCAGCTCTATGGATATCAGGTTGCCCCGGTAAACAGCCGTGCCGATGAGAACATGATGATTGACACCACTCTGCTTGTGCACTTCTTTGGCAAGAAGGGGAAGGCGGAGCTAACGTTTGACGACTTTTACAGATTCATGGATAATCTGCAAACTGAGATGTTGGAGATTGAGTTCCTGACCTATTCCAAAGGCATGACTACCATCAGCGAGGAGGACTTTGCAAGAATCTTACTGCGCTATACTAATGTAGAGGACATCCGCAGCTATCTGGAGAACGTGCGTCAGTGCATACCTGACGAGAAGGGCATCACCTTCGAGGAGTTCAGGTCTTTCTTTCAGTTTCTTAATAATCTGGAAGACTTCGCCATTGCCATGCAGATGTACAACTTTGCCTGCCGTTCCATTGGACAAGatgagtTTGCTCGGGCTGTGTATGTGGCAACAGGCCTTAAGCTGACCCGACACCTGGTTAACACCATCTTCAAGATATTTGATGTTGATCATGATGATCAGCTCAGTTACAAAGAGTTTATAGGTATCATGAAGGACCGGCTGCACCGTGGAGGCAGAGGCTATAAATCTGTTGAGCGCTTTACTTCTTTTAGATCATGTCTGAAGAAGGAACTGGCTAGCAGCAGGTGA
>TCONS_00000355
CATGTGCGCTGGCAAGCGTTTTCATTTATCCGGAGTGCGTAAACGTGCGCATTTTTCACATGTATGTTTACGAGCAGCGCACAGATGCGTGCAGGACCTGCTGCTGCTCCGTTCAGGGTGATCCCGGAGAGGGAGCAGCAACATCTCGCGATGAATGCATGAGAATTCGAGAATATTGTGCAAATTCTGTCATACCAACAATAATGGCCGCTGTGCGCAGAGTCATATTTAAGAGTTTGTCGCTCTCTTTAGCTGCACGGAACGCGCTTTTTCGCTCTCCGGTGAAGGATAAACGATGCACACGCACAGGACTAGCAGTTGCAGTGGGCGTCGCGGCCGGAGGAGCggtgttgtattattattattcagaaatGTGCGGATTTGGAGGGAGGAAAGCCCCGATAAACCGAACAGTCTGTCGGGCTCTGCTGCCTTCACTGCCCGCTGTAGCCGCAAAGGAGAAGGCTCCAGTGTTTGATTTTGATGAAACTGACGTGTACATGTCGTCCCATGAGCATCGTTTCCGTCTCTTCAGCTCAGTGGAGTATGAGGGACAGCTGTATATGACTCCTCAAAACTTCATTGAGTCTGTCACCATGAGTGAGCCTCGCATCAAGAAACCGTGGAGGTCCCTCACCAAACAGGAGTTGGAGAAGATCTTGTCTGATACTCCACCAGTGTGGAAAGGAACATCCAAGCTGTTCAGGAACCTTCGAGAACGAGGCATCATCGCTTACACCGAGTATCTCTTTCTGCTCTGCATTCTGACAAAACCTCATGCTGGTTTTAAAATTGCCTTTAACATGTTTGACGCTGATGGTAACCAGATGGTGGATAAACGAGAATTTATGGTGTTGCAAGAAATCTTCAGAAAGAAAAACGAGAAAAAGGGAAGGAAAGGAGATGCTGAGAAATCTGCTCAACTTAGTATGCAGCTCTATGGATATCAGGTTGCCCCGGTAAACAGCGTGCTAAAAAAAGAGAGTCAAGAGTTTGTGCCCAGGAGCTACTGGGACAAGCTGAGACGTGGCGCGAGCCAAGCCCTGTTTTCTGACCTGGCAGAGCGTGCCGATGAGAACATGATGATTGACACCACTCTGCTTGTGCACTTCTTTGGCAAGAAGGGGAAGGCGGAGCTAACGTTTGACGACTTTTACAGATTCATGGATAATCTGCAAACTGAGATGTTGGAGATTGAGTTCCTGACCTATTCCAAAGGCATGACTACCATCAGCGAGGAGGACTTTGCAAGAATCTTACTGCGCTATACTAATGTAGAGGACATCCGCAGCTATCTGGAGAACGTGCGTCAGTGCATACCTGACGAGAAGGGCATCACCTTCGAGGAGTTCAGGTCTTTCTTTCAGTTTCTTAATAATCTGGAAGACTTCGCCATTGCCATGCAGATGTACAACTTTGCCTGCCGTTCCATTGGACAAGatgagtTTGCTCGGGCTGTGTATGTGGCAACAGGCCTTAAGCTGACCCGACACCTGGTTAACACCATCTTCAAGATATTTGATGTTGATCATGATGATCAGCTCAGTTACAAAGAGTTTATAGGTATCATGAAGGACCGGCTGCACCGTGGAGGCAGAGGCTATAAATCTGTTGAGCGCTTTACTTCTTTTAGATCATGTCTGAAGAAGGAACTGGCTAGCAGCAGGTGAACAAGGAACTTAATTTCTCTttcctctgaaaaaaaaaagcgcTGATAATAATCTGCTGTGGAAATATTGGAGAGAAAGCAAAGCGCTCAAGATTTCACCGTGAGATCTACCTCTTCCTTTTCTGAGCTCCAAACCTCTGAGAAGCCGGATTGGGATCGACGCTCTGCACTGCATGTTCTCGCATCTGCGCAGCTCTGCATGATCAAACTTCATTCTATAATCTGATATTTATCTAGTATGCATGCTGCCCGGAGAAAAACACATCTATCTGAAGTTCAGTTGGTGCAATATCAAATTTTTAAGTCATACAGTTGCACGTATGTGTCCAGACAGTGTAAAGATTATTTTTATGAAGATTTAAGCAGCTTAAATTTCTCATTTTAGACTTTTATTGATTCAATTtagtcatctttatttctatagcgctctGTCAAAGCAGCTTTGGAAAATAATTATATGATATGATTATAATGTACTATTCAAttatgtttgttttggtttttcgtTGTTTTCTATCAGGGTTGATTATATATACCGAATCATACTGTGTGTGAAGAGTGATATTTTTCAGTATATGGGTTTAAAAGAGATCTTGTGGCTCATGTAGCGTTAAGCCCTGTAATGAACATCCACTTAAtcaaaaagaagttatttttctCATACAGTATTTCATTTTGAACAGGTATGATTGTACTACGATTGTATAAAATTGTCTTATCAtatgaggcaaataactgcagTCTTAGCACGCTTTTTATGACTGCAATTCAAGCACTTGATGAATACAGACTTGAAATTTCTCTTCAAAAAGTTATGCAAATTAATAAAGTAGTTTCAACATACACACTTGTCTGATACGAAGTTCTCACCATGTCGTGATTGTCATGATTTGGCATGACATATATGCACATATTCCAATGtacttttgttaaaatattgaaactgtatttaattataaacaaacaaactgaaaataaTTATACATGGAGAAAATGTGATCAGGGTTTTTTCTAttcaaatacaatacaaatttgacagtttttaaattaaaaataaaatctttgtaaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatagtGTTCGAGAACAagacaaataacaaaacaataaaaacaagtcGATAGAATTATAAAAATGTCATAATAAAACATCATTAGAAATCATATTGATAATTTGGATCTGGTCATTTAATTTCTGCCGTCTGTTGTTGGCATTTAAGCAATACATTGAATATAATAGGTCCTAAAACATTAAGTAAACCATTAAAGTGAACTGAATTGACAGAATTGGTAcaatttttatagtatttttatgaaAAATCCTTAATTTGATCAGGGAATGTTTCGATTAAGCCTACTTGTAACGTTTTGAAACATCAGGTCTCACAAGAAGAGAAGATAGTACTGTCTCAATTCCtggctaaataaaaaataaaggaataaatatccctgctgaaaaacagcttaaaccagcctaagatgGTTaagtggttttagctggttgaccagactggttttagaagggttctGGTCATTTCCATTGGTTTCagaatttccagcctggtcttagcttaGGAAATGACCAGCAGAAGCCAGCTAAAACCAACGTGATCTGCCTGGTTTAAGATGGGCATAGCTGCTTTTGGCTACTCTCAGTCTGCCTTTCATAAGTCTAACGCAATTAGGTCCCTAGTTCACTATCTCTGAAAAGTAATGTTATTAGTATTTGGCTATCGAATGTATGTTTAGAGACATTTGGtcataaaatgcattaaaaaataaccTTTAGATTATGAACAAAAATATTAACTCTTAACGGAACCTTTCTACAGAACGGACGATGTACTCCGGACGTTTATTGGTGATGTACCTATTCGCGatacgcaaaacatttttttactcaaTAAAACGTCTACAATATGCATACATTTGCCGGTACTTGACGTGATTGTACATATCAGTTCTGTCCGAAAGTCTATAATGCTTTTGTGGGACATTTTTGTTCAACTTTATTGAGAAACAGTAATGCCCGCTCTTGATTGGCTGCTTAGTCATGCGTAGTCGGTCGGGTTGGACGTGCATTATGGGTAACTGCCTTTATGACAAGAAAACTAGTTTATTTTCATTGTTTCTAATGCACAAATAGCGCGTTTGATCTCATTTAAGTAATACATACAATGCCAACGACACGAAATGGGTTACAAACTGTACTCAACTGCGAATATGAGTGTTGTTTTTCTCATCGGTGACAGTG
>TCONS_00000356
ACCAACAATAATGGCCGCTGTGCGCAGAGTCATATTTAAGAGTTTGTCGCTCTCTTTAGCTGCACGGAACGCGCTTTTTCGCTCTCCGGTGAAGGATAAACGATGCACACGCACAGGACTAGCAGTTGCAGTGGGCGTCGCGGCCGGAGGAGCggtgttgtattattattattcagaaatGTGCGGATTTGGAGGGAGGAAAGCCCCGATAAACCGAACAGTCTGTCGGGCTCTGCTGCCTTCACTGCCCGCTGTAGCCGCAAAGGAGAAGGCTCCAGTGTTTGATTTTGATGAAACTGACGTGTACATGTCGTCCCATGAGCATCGTTTCCGTCTCTTCAGCTCAGTGGAGTATGAGGGACAGCTGTATATGACTCCTCAAAACTTCATTGAGTCTGTCACCATGAGTGAGCCTCGCATCAAGAAACCGTGGAGGTCCCTCACCAAACAGGAGTTGGAGAAGATCTTGTCTGATACTCCACCAGTGTGGAAAGGAACATCCAAGCTGTTCAGGAACCTTCGAGAACGAGGCATCATCGCTTACACCGAGTATCTCTTTCTGCTCTGCATTCTGACAAAACCTCATGCTGGTTTTAAAATTGCCTTTAACATGTTTGACGCTGATGGTAACCAGATGGTGGATAAACGAGAATTTATGGTGTTGCAAGAAATCTTCAGAAAGAAAAACGAGAAAAAGGGAAGGAAAGGAGATGCTGAGAAATCTGCTCAACTTCGTGCCGATGAGAACATGATGATTGACACCACTCTGCTTGTGCACTTCTTTGGCAAGAAGGGGAAGGCGGAGCTAACGTTTGACGACTTTTACAGATTCATGGATAATCTGCAAACTGAGATGTTGGAGATTGAGTTCCTGACCTATTCCAAAGGCATGACTACCATCAGCGAGGAGGACTTTGCAAGAATCTTACTGCGCTATACTAATGTAGAGGACATCCGCAGCTATCTGGAGAACGTGCGTCAGTGCATACCTGACGAGAAGGGCATCACCTTCGAGGAGTTCAGGTCTTTCTTTCAGTTTCTTAATAATCTGGAAGACTTCGCCATTGCCATGCAGATGTACAACTTTGCCTGCCGTTCCATTGGACAAGatgagtTTGCTCGGGCTGTGTATGTGGCAACAGGCCTTAAGCTGACCCGACACCTGGTTAACACCATCTTCAAGATATTTGATGTTGATCATGATGATCAGCTCAGTTACAAAGAGTTTATAGGTATCATGAAGGACCGGCTGCACCGTGGAGGCAGAGGCTATAAATCTGTTGAGCGCTTTACTTCTTTTAGATCATGTCTGAAGAAGGAACTGGCTAGCAGATAAGTATCCAAGTAATCCTTTATTTTGAAATCCCACCAAATTAAATATTGACAATTCATTTACTTAACTTTGATTGTTCATAAAGATTATGCAAGCATAAAGAACATTAAATTCTTATCTAGATATATACCGTAAAACAAATACCAGTTGGCAGTTCatactgctgtggcgactcctgataaatcagggactaagccaaagggaaatgaatgaatgaatgttttaatagCTTAGTGTTTAGACAAATGAACACATTAACATTTTTAGCTATACGtagacccacacggaatctgtgtgcacagaaatccacagatttttagcctatcattgagtctgtttatttacttgtgtaaacgtgtgcacatttattttaatcagtttttatattGATTCCAGcagtattattgactaatatgaaaatctttacatgatttatttacaatacagtttgtaatgtaatattttctgtcttttagtagttatattatttaaaagaCTTGCTTTggttaccaaataagtggatctaattagatttgcattgtaaatattaaataaaagttttaaagtattattttttatttaatatattaagtttttatttattacactCCCAAAATGTCTCCATTTAAAtccatagatttatttattttttctcttgcagaaatagcaaaaaatatacacagattttgtctggccctagCTATAAGTCCAACATTGTCTCTAATACTAAACCCAATATTGTATATGAATAGAATTTTAATATATCAACTTTTTTAAAACTTATCTCTACCAATCAAGTAGTGCCTTTAAAGTAGTGATATATTAATAATTCAGTTTAGATGTTGTTGCTAATGTGTTTTGCTGAAAACTTgtgctaaaataaaacattgctaATGCCAAAATGTTGAACTCTCTGAACGCTTATACTAGAAAAAGATTTGTTTAATATCTGATGACTGAGcgagtaaatatttgaaaaataaagttAATGATCTTTTTTGATTTGCACCAGGTGAACAAGGAACTTAATTTCTCTttcctctgaaaaaaaaaagcgcTGATAATAATCTGCTGTGGAAATATTGGAGAGAAAGCAAAGCGCTCAAGATTTCACCGTGAGATCTACCTCTTCCTTTTCTGAGCTCCAAACCTCTGAGAAGCCGGATTGGGATCGACGCTCTGCACTGCATGTTCTCGCATCTGCGCAGCTCTGCATGATCAAACTTCATTCTATAATCTGATATTTATCTAGTATGCATGCTGCCCGGAGAAAAACACATCTATCTGAAGTTCAGTTGGTGCAATATCAAATTTTTAAGTCATACAGTTGCACGTATGTGTCCAGACAGTGTAAAGATTATTTTTATGAAGATTTAAGCAGCTTAAATTTCTCATTTTAGACTTTTATTGATTCAATTtagtcatctttatttctatagcgctctGTCAAAGCAGCTTTGGAAAATAATTATATGATATGATTATAATGTACTATTCAAttatgtttgttttggtttttcgtTGTTTTCTATCAGGGTTGATTATATATACCGAATCATACTGTGTGTGAAGAGTGATATTTTTCAGTATATGGGT

Function

symbol description
micu3a Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and mitochondrial calcium ion homeostasis. Predicted to act upstream of or within mitochondrial calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of uniplex complex. Orthologous to human MICU3 (mitochondrial calcium uptake family member 3).

GO:

id name namespace
GO:0051560 mitochondrial calcium ion homeostasis biological_process
GO:0036444 calcium import into the mitochondrion biological_process
GO:0006851 mitochondrial calcium ion transmembrane transport biological_process
GO:1990246 uniplex complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070713-1 Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and mitochondrial calcium ion homeostasis. Predicted to act upstream of or within mitochondrial calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of uniplex complex. Orthologous to human MICU3 (mitochondrial calcium uptake family member 3).

Ensembl:

ensembl_id ENSDARG00000078599

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000354 False 1574 mRNA 0.48 14 16396870 16455921
TCONS_00000355 False 4006 mRNA 0.40 15 16396870 16458257
TCONS_00000356 True 2929 mRNA 0.38 12 16397063 16456501

Neighbor

gene id symbol gene type direction distance location
XLOC_000210 tusc3 coding upstream 176635 16073887 ~ 16220235 (+)
XLOC_000211 CU633160.1 coding upstream 234650 16162104 ~ 16162220 (+)
XLOC_000209 NA coding upstream 960545 15422226 ~ 15436325 (+)
XLOC_000208 pi4k2b coding upstream 1111415 15258641 ~ 15285455 (+)
XLOC_000207 hgsnat coding upstream 1139555 15226268 ~ 15257315 (+)
XLOC_000213 CT573256.2 coding downstream 268 16458525 ~ 16458741 (+)
XLOC_000214 vps37a coding downstream 4822 16463079 ~ 16480213 (+)
XLOC_000215 mtus1b coding downstream 90476 16548733 ~ 16619858 (+)
XLOC_000216 pcm1 coding downstream 163088 16621345 ~ 16654161 (+)
XLOC_000217 NA coding downstream 213832 16672089 ~ 16674126 (+)
XLOC_000204 NA non-coding upstream 1323206 15073400 ~ 15073664 (+)
XLOC_000203 NA non-coding upstream 1375448 14851622 ~ 15021422 (+)
XLOC_000202 NA non-coding upstream 1626216 14769501 ~ 14770654 (+)
XLOC_000218 CR377220.1 non-coding downstream 310426 16768683 ~ 16768809 (+)
XLOC_000224 CR774194.1 non-coding downstream 1400123 17858380 ~ 17861928 (+)
XLOC_000227 NA non-coding downstream 1507857 17966114 ~ 17970284 (+)

Expression


Co-expression Network