XLOC_000217


Basic Information

Item Value
gene id XLOC_000217
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16672089 ~ 16674126 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003052
TGATGAGAGTCGTGCTGTTACTTGTGAAGATGATGGAGTAGGGAGTGGGGTGAAGGAGCAAAAGTTGAAGAAGAAATCGAGGTTTTGGAGGAAGCTGGCCTGATTCAGCTTTTCAAGCGCAAGAACTGGAAGGGGTGAAAAGGTGGAGCAGGTCACCGAAGCAGAATCTTCTACTGATTGTAAATCCCTTTTTTGTGTGTGActggaaaaaattaaataaaaaaataatcaacataGCTTTAAACTATTGTCTCagtaaatatatgtatttgtaaaAGGATTGAGAAGTTTCTGagagtttttatttatgtagttgTCGTATATTCCCCTCTTTAGATCAAACCTCTGTTGGGAACAACTCATGCACCGCTGAGGACTGTAATTACCAGCAAGCTCCCAACAGTAGCCTTGAGGTTTCTCCCCCCACTGTTGACCTGGAGCAGTGTGAGAAGGTGGAGCAGGACACCCAAGCAGAACCTTCTAGTTATGGTAAATGCCTTTACCTTTTGTGTGACTGggacaaaatgaaataaaaaatgatcatCATAGCTTTAAACTTTAGTCTCTGTAAGTATATGTATAATTTACTTGTAAAAGAATTGAAAAGTTTTTGTGcgtttgtatttaaataaaagttgaatgTATATTTCCTTCTTTAGATCAAACCTCTGCAGGGAAAATCTCATGCATTATTGAGGACAATGATTACCAGCAAGCTCTTTACAGCCTTAAGGTTCCTCCCTCCACTATTGACCTGCAAATCCAGCAGGAGGAAGAAACTTCTACTGATGGTAAATCACTTCATCTTTCGTGTGTACTGaacttaatcattaaaaaaagatcatcaTAGCTTTAAACATTTGCAAAGTTCAAATATTCACATGCGGCAGTTCGTATATTTGAACTTTATAGTTTTGTTTCTGTAAATactatatatgtattatttgtagCAGTattgaaatgtttgtgttttctaatgtataatatatatttcctTCTTTAGATCAAACCTCAGTGGAGATCACATTAGAGAGTTTTGGTCCCCAGGACACTAACTGTAGCCTTGAGATTCCTCTCTACACCAATAAATCCAGGAGCAATGTGAGAAGGGGGAGCAGGAGGCAGAATCTTCTACTGATGGTAAATCACCATACATTTTGTGTAGacttaatcatttaaaaagattATAGCTTTAAACATTTGCAGAGTTCAAATGTTCAGATGTGCAGAGGTTTGTGTATCTGAACACCTCAGTTTTGTCTCTGTAaatactatatacagttgaagtcagaataataagccctcctgtttattttttcccaatttctgtttaacaaagagaaaaaatttctcaacacatttctaaacaatagttttaatagctcatttctaataactgatttattttatatttgtcatgatgacagtaaataatattttacttgttatttttcaagactcttctacacagctttaagtgacatttaaaggctgaactaggttaattagacaggttagggtgattaggcaagttattgtataacgacggtttgttctgtagactaatggaaaacaatatagcttaaaagggctaataattttgaccttaaaatgttgtttaaaaatgaaataaaaaccgcttttattctagccgaaataaaacaaataactttctccagaagaaaagatattatcagacatactgtgaaaatgtccttgctctgttaaacataatttgggaaagaTTTAgcggcttataattctgacttcaactatgtattATTTGTAACCGCATTGAAATGTTTgggtgtttatttatataaatgttaaatgtgttttTCTCTCTTTAGATCAAACCTCTGTGGAGATCACATGTACTGTAGAGAGTTGTTGTCACCAGGACACTCTTAACAGTAGCCTTGAGGTTCCTCCCTCCACTGTTGACCAGCAAGTCCAGGAGCTTCCAGTTGATCTGTCAGAAGAAGATACTGTGTGCTCTGGCAGAAAACCCAAACCAAGATGTGGTCTTGATTATTGG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003052 True 2038 lncRNA 0.35 1 16672089 16674126

Neighbor

gene id symbol gene type direction distance location
XLOC_000216 pcm1 coding upstream 17928 16621345 ~ 16654161 (+)
XLOC_000215 mtus1b coding upstream 52231 16548733 ~ 16619858 (+)
XLOC_000214 vps37a coding upstream 191876 16463079 ~ 16480213 (+)
XLOC_000213 CT573256.2 coding upstream 213348 16458525 ~ 16458741 (+)
XLOC_000212 micu3a coding upstream 213832 16396870 ~ 16458257 (+)
XLOC_000218 CR377220.1 coding downstream 94557 16768683 ~ 16768809 (+)
XLOC_000219 fat1a coding downstream 702796 17376922 ~ 17524922 (+)
XLOC_000220 casp3a coding downstream 853216 17527342 ~ 17536307 (+)
XLOC_000221 helt coding downstream 919266 17593392 ~ 17595045 (+)
XLOC_000222 slc25a4 coding downstream 1002619 17676745 ~ 17679089 (+)
XLOC_000211 CU633160.1 non-coding upstream 509869 16162104 ~ 16162220 (+)
XLOC_000209 NA non-coding upstream 1235764 15422226 ~ 15436325 (+)
XLOC_000204 NA non-coding upstream 1598425 15073400 ~ 15073664 (+)
XLOC_000203 NA non-coding upstream 1650667 14851622 ~ 15021422 (+)
XLOC_000224 CR774194.1 non-coding downstream 1184254 17858380 ~ 17861928 (+)
XLOC_000227 NA non-coding downstream 1291988 17966114 ~ 17970284 (+)
XLOC_000228 NA non-coding downstream 1490991 18165117 ~ 18169100 (+)
XLOC_000230 NA non-coding downstream 1681620 18355746 ~ 18363871 (+)

Expression


Co-expression Network