XLOC_000222 (slc25a4)


Basic Information

Item Value
gene id XLOC_000222
gene name slc25a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17676745 ~ 17679089 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000375
CATTTGAAGGGTCGTCGCAGGGATTCATATAGGGTCCTAAGGTGGTGAGATTGTCTTCCAGGAGATAGGACATCATGTCTGACGCAGCGATCAGCTTCTTGAAGGATTTCTTGGCCGGTGGTGTGGCCGCTGCCATTTCCAAGACAGCAGTTGCCCCCATTGAGAGAGTCAAGCTGTTACTGCAGGTCCAACATGCCAGCAAACAGATCACGGCCGATATGCAGTACAAAGGCATCATTGACTGCGTAGTAAGAATTCCCAAAGAGCAGGGATTCCTGTCGTTCTGGAGAGGCAATCTTGCCAACGTCATCAGATACTTCCCAACACAAGCCCTCAACTTTGCCTTCAAAGACAAGTACAAGAAGATCTTCCTCGGAGGAGTGGACAAGAATACCCAGTTCTGGCGTTACTTTGCCGGTAATCTGGCCTCTGGCGGTGCTGCAGGTGCGACCTCTCTGTGCTTCGTCTACCCTCTTGACTTCGCCAGAACAAGACTTGCTGCTGATATCGGCAAAGGTGCAGCCGAGAGAGAGTTCACCGGTCTCGGAAACTGTGTTGCCAAGATCTTCAAGTCTGATGGTCTTAGGGGTCTCTACCTTGGCTTCAATGTGTCAGTCCAGGGCATTATCATCTACAGAGCTGCTTACTTCGGTATCTATGATACAGCTAAAGGTATGTTGCCGGatcccaagcacacacacattgttgTCAGTTGGATGATCGCCCAGACTGTCACAGCCGTTGCTGGTATCATTTCATATCCCTTCGACACTGTCAGGCGTCGTATGATGATGCAGTCCGGACGCAAAGGAGCTGACATTATGTACAAGGGCACAATCGACTGTTGGAAAAAGATCGCCAAAGATGAGGGTGGTAAAGCTTTCTTTAAGGGCGCCTTGTCCAATGTGATCAGAGGTGCGGGAGGCGCTTTTGTGCTGGTCCTGTATGATGAGATCAAGAAGTACACATAAACATTCTCCATCCATCATGTCCATCCCCACCAAAGGAAACCCTGAGCGCTGTGTATGTCTTAATTGTGTAGAATGTTTAACAACCAAGGGAAGTGTACTTAGCCAAGCTGGCCCAGGGGTGGATGGTGATCATGTGATCGTGGGTGGTCACTGCATCCTCCACCCCAACACTTGTAAATATATTGAAGTTTACCTGCTACTGCCCTTCAATTTAAGTCGACTTTCGGTCTGGTTAGATTGAAAGTcatggtttatttttttctcatttatttatttgaatttcaaTTGATTTCCTCATAAATCTTGAGGGTCTACATGTTCTACAGTGGCTCTTCTCTTCTAGTTAGCTGAAAACATTTTGTCCCAGACTGAAGCAAGTGACCGTACACTGGAAAGCTGAATGTTTTTGTGGTGTATTCCACTTCATGTGttcttttaataacaataaagctGAAAATACACA

Function

symbol description
slc25a4 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in cephalic musculature; hypaxial myotome region; musculature system; myotome; and somite. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); mitochondrial DNA depletion syndrome (multiple); and mitochondrial myopathy (multiple). Orthologous to human SLC25A4 (solute carrier family 25 member 4).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5275 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in cephalic musculature; hypaxial myotome region; musculature system; myotome; and somite. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); mitochondrial DNA depletion syndrome (multiple); and mitochondrial myopathy (multiple). Orthologous to human SLC25A4 (solute carrier family 25 member 4).

Ensembl:

ensembl_id ENSDARG00000027355

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000375 True 1434 mRNA 0.47 4 17676745 17679089

Neighbor

gene id symbol gene type direction distance location
XLOC_000221 helt coding upstream 81700 17593392 ~ 17595045 (+)
XLOC_000220 casp3a coding upstream 140438 17527342 ~ 17536307 (+)
XLOC_000219 fat1a coding upstream 151823 17376922 ~ 17524922 (+)
XLOC_000218 CR377220.1 coding upstream 907936 16768683 ~ 16768809 (+)
XLOC_000217 NA coding upstream 1002619 16672089 ~ 16674126 (+)
XLOC_000223 ankrd37 coding downstream 16337 17695426 ~ 17698773 (+)
XLOC_000224 CR774194.1 coding downstream 179291 17858380 ~ 17861928 (+)
XLOC_000225 tlr3 coding downstream 213855 17892944 ~ 17898227 (+)
XLOC_000226 cyp4v8 coding downstream 221217 17900306 ~ 17912645 (+)
XLOC_000227 NA coding downstream 287025 17966114 ~ 17970284 (+)
XLOC_000213 CT573256.2 non-coding upstream 1218004 16458525 ~ 16458741 (+)
XLOC_000211 CU633160.1 non-coding upstream 1514525 16162104 ~ 16162220 (+)
XLOC_000209 NA non-coding upstream 2240420 15422226 ~ 15436325 (+)
XLOC_000228 NA non-coding downstream 486028 18165117 ~ 18169100 (+)
XLOC_000230 NA non-coding downstream 676657 18355746 ~ 18363871 (+)
XLOC_000233 NA non-coding downstream 1150083 18829172 ~ 18833443 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_05936720_05938628 SLC25A4, SLC25A5, SLC25A4.L coding CI01000300 null 5935996 ~ 5939057 (+)
bowfin (Amia calva) AMCG00015857 slc25a4,LOC102781543,LOC107562743 coding CM030132.1 CM030132.1 26131082 ~ 26133856 (-)