RNA id: TCONS_00000375


Basic Information

Item Value
RNA id TCONS_00000375
length 1434
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_000222
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17676745 ~ 17679089 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTGAAGGGTCGTCGCAGGGATTCATATAGGGTCCTAAGGTGGTGAGATTGTCTTCCAGGAGATAGGACATCATGTCTGACGCAGCGATCAGCTTCTTGAAGGATTTCTTGGCCGGTGGTGTGGCCGCTGCCATTTCCAAGACAGCAGTTGCCCCCATTGAGAGAGTCAAGCTGTTACTGCAGGTCCAACATGCCAGCAAACAGATCACGGCCGATATGCAGTACAAAGGCATCATTGACTGCGTAGTAAGAATTCCCAAAGAGCAGGGATTCCTGTCGTTCTGGAGAGGCAATCTTGCCAACGTCATCAGATACTTCCCAACACAAGCCCTCAACTTTGCCTTCAAAGACAAGTACAAGAAGATCTTCCTCGGAGGAGTGGACAAGAATACCCAGTTCTGGCGTTACTTTGCCGGTAATCTGGCCTCTGGCGGTGCTGCAGGTGCGACCTCTCTGTGCTTCGTCTACCCTCTTGACTTCGCCAGAACAAGACTTGCTGCTGATATCGGCAAAGGTGCAGCCGAGAGAGAGTTCACCGGTCTCGGAAACTGTGTTGCCAAGATCTTCAAGTCTGATGGTCTTAGGGGTCTCTACCTTGGCTTCAATGTGTCAGTCCAGGGCATTATCATCTACAGAGCTGCTTACTTCGGTATCTATGATACAGCTAAAGGTATGTTGCCGGatcccaagcacacacacattgttgTCAGTTGGATGATCGCCCAGACTGTCACAGCCGTTGCTGGTATCATTTCATATCCCTTCGACACTGTCAGGCGTCGTATGATGATGCAGTCCGGACGCAAAGGAGCTGACATTATGTACAAGGGCACAATCGACTGTTGGAAAAAGATCGCCAAAGATGAGGGTGGTAAAGCTTTCTTTAAGGGCGCCTTGTCCAATGTGATCAGAGGTGCGGGAGGCGCTTTTGTGCTGGTCCTGTATGATGAGATCAAGAAGTACACATAAACATTCTCCATCCATCATGTCCATCCCCACCAAAGGAAACCCTGAGCGCTGTGTATGTCTTAATTGTGTAGAATGTTTAACAACCAAGGGAAGTGTACTTAGCCAAGCTGGCCCAGGGGTGGATGGTGATCATGTGATCGTGGGTGGTCACTGCATCCTCCACCCCAACACTTGTAAATATATTGAAGTTTACCTGCTACTGCCCTTCAATTTAAGTCGACTTTCGGTCTGGTTAGATTGAAAGTcatggtttatttttttctcatttatttatttgaatttcaaTTGATTTCCTCATAAATCTTGAGGGTCTACATGTTCTACAGTGGCTCTTCTCTTCTAGTTAGCTGAAAACATTTTGTCCCAGACTGAAGCAAGTGACCGTACACTGGAAAGCTGAATGTTTTTGTGGTGTATTCCACTTCATGTGttcttttaataacaataaagctGAAAATACACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5275 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in cephalic musculature; hypaxial myotome region; musculature system; myotome; and somite. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); mitochondrial DNA depletion syndrome (multiple); and mitochondrial myopathy (multiple). Orthologous to human SLC25A4 (solute carrier family 25 member 4).

Ensembl:

ensembl_id ENSDART00000030665

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003052 lncRNA upstream 1002619 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 1101816 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 2240420 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 2603081 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 2655323 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00000380 lncRNA downstream 229970 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 287025 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 287025 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 287822 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00002823 lncRNA downstream 290067 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00000374 mRNA upstream 81700 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000372 mRNA upstream 140438 17527378 ~ 17536307 (+) False XLOC_000220
TCONS_00000373 mRNA upstream 144933 17527931 ~ 17531812 (+) True XLOC_000220
TCONS_00000370 mRNA upstream 145203 17527342 ~ 17531542 (+) False XLOC_000220
TCONS_00000371 mRNA upstream 145218 17527378 ~ 17531527 (+) False XLOC_000220
TCONS_00000376 mRNA downstream 16337 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000378 mRNA downstream 213855 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000379 mRNA downstream 221217 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000381 mRNA downstream 555381 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 871775 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000369 other upstream 154569 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 907936 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1062156 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1218004 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 1514525 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000377 other downstream 179291 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000400 other downstream 1856031 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 2026610 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 2129362 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 2135776 19814865 ~ 19819096 (+) True XLOC_000250

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_05936720_05938628.mRNA True 2050 mRNA 0.43 4 CI01000300 5935996 ~ 5939057 (+)
bowfin (Amia calva) AMCG00015857 True 1200 mRNA 0.49 4 CM030132.1 26131082 ~ 26133856 (-)