Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000373 |
| length | 862 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_000220 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 17527342 ~ 17536307 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071300 | cellular response to retinoic acid | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0030216 | keratinocyte differentiation | biological_process |
| GO:0030218 | erythrocyte differentiation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0071466 | cellular response to xenobiotic stimulus | biological_process |
| GO:0071236 | cellular response to antibiotic | biological_process |
| GO:0048696 | regulation of collateral sprouting in absence of injury | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| GO:0097153 | cysteine-type endopeptidase activity involved in apoptotic process | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-011210-1 | Enables peptidase activity. Acts upstream of or within several processes, including cellular response to antibiotic; cellular response to retinoic acid; and regulation of collateral sprouting in absence of injury. Predicted to be active in cytoplasm. Is expressed in several structures, including axis; germ ring; gonad; gut; and nervous system. Human ortholog(s) of this gene implicated in Parkinson's disease; colon cancer; and lung non-small cell carcinoma. Orthologous to human CASP3 (caspase 3). |
| ensembl_id | ENSDART00000131927 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003052 | lncRNA | upstream | 853805 | 16672089 ~ 16674126 (+) | True | XLOC_000217 |
| TCONS_00003051 | lncRNA | upstream | 953002 | 16573966 ~ 16574929 (+) | False | XLOC_000215 |
| TCONS_00003050 | lncRNA | upstream | 2091606 | 15422226 ~ 15436325 (+) | True | XLOC_000209 |
| TCONS_00002820 | lncRNA | upstream | 2454267 | 15073400 ~ 15073664 (+) | True | XLOC_000204 |
| TCONS_00003049 | lncRNA | upstream | 2506509 | 14851622 ~ 15021422 (+) | True | XLOC_000203 |
| TCONS_00000380 | lncRNA | downstream | 377247 | 17909059 ~ 17911739 (+) | True | XLOC_000226 |
| TCONS_00002822 | lncRNA | downstream | 434302 | 17966114 ~ 17968446 (+) | False | XLOC_000227 |
| TCONS_00002821 | lncRNA | downstream | 434302 | 17966114 ~ 17968446 (+) | False | XLOC_000227 |
| TCONS_00003053 | lncRNA | downstream | 435099 | 17966911 ~ 17970284 (+) | False | XLOC_000227 |
| TCONS_00002823 | lncRNA | downstream | 437344 | 17969156 ~ 17970275 (+) | False | XLOC_000227 |
| TCONS_00000368 | mRNA | upstream | 3009 | 17376922 ~ 17524922 (+) | False | XLOC_000219 |
| TCONS_00000365 | mRNA | upstream | 873770 | 16621345 ~ 16654161 (+) | False | XLOC_000216 |
| TCONS_00000366 | mRNA | upstream | 874470 | 16625678 ~ 16653461 (+) | True | XLOC_000216 |
| TCONS_00000362 | mRNA | upstream | 908073 | 16574312 ~ 16619858 (+) | False | XLOC_000215 |
| TCONS_00000374 | mRNA | downstream | 61580 | 17593392 ~ 17595045 (+) | True | XLOC_000221 |
| TCONS_00000375 | mRNA | downstream | 144933 | 17676745 ~ 17679089 (+) | True | XLOC_000222 |
| TCONS_00000376 | mRNA | downstream | 163614 | 17695426 ~ 17698773 (+) | True | XLOC_000223 |
| TCONS_00000378 | mRNA | downstream | 361132 | 17892944 ~ 17898227 (+) | True | XLOC_000225 |
| TCONS_00000379 | mRNA | downstream | 368494 | 17900306 ~ 17912645 (+) | False | XLOC_000226 |
| TCONS_00000369 | other | upstream | 5755 | 17513515 ~ 17522176 (+) | True | XLOC_000219 |
| TCONS_00000367 | other | upstream | 759122 | 16768683 ~ 16768809 (+) | True | XLOC_000218 |
| TCONS_00000364 | other | upstream | 913342 | 16600698 ~ 16614589 (+) | True | XLOC_000215 |
| TCONS_00000357 | other | upstream | 1069190 | 16458525 ~ 16458741 (+) | True | XLOC_000213 |
| TCONS_00000353 | other | upstream | 1365711 | 16162104 ~ 16162220 (+) | True | XLOC_000211 |
| TCONS_00000377 | other | downstream | 326568 | 17858380 ~ 17861928 (+) | True | XLOC_000224 |
| TCONS_00000400 | other | downstream | 2003308 | 19535120 ~ 19539639 (+) | False | XLOC_000244 |
| TCONS_00000408 | other | downstream | 2173887 | 19705699 ~ 19705832 (+) | True | XLOC_000247 |
| TCONS_00000413 | other | downstream | 2276639 | 19808451 ~ 19815449 (+) | False | XLOC_000250 |
| TCONS_00000414 | other | downstream | 2283053 | 19814865 ~ 19819096 (+) | True | XLOC_000250 |
