RNA id: TCONS_00003050


Basic Information

Item Value
RNA id TCONS_00003050
length 812
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_000209
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 15422226 ~ 15436325 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGAGATCAGAAAATGAGCAATAGAGCCATTGTTCTGCACCCAGAGCCAGAGCCGTGACGGGGGAATGAATGCTGGAGGATGAACGCACATCAAAGAAGCACAGGGAAAAAGCTGCAGAGGGAGGTTTTCTGCAGACATGATTATAGGGGGCTGAACAGGAATTTCTGTGGCTGCGCAGGAATGTCGGGGTCTCTGTCTCTGCTGACCTTCATCCACAAACTCCAGCTCTGTCCGCTGATCTCTGACCTCGCGTGATCCTGAAGCCCCTGGAACAGATCATACTGACAGAAACACCTCCATCATCAGGCTCTGAAGAGCCAAGCATCCTGCCCCGTGAAGAATGCAGCTTTCTGTTTAAAACATTGCAGCATATTCTACTGCTTCTTCATCTACATGTCCTGTCAAAAGCTTGGAATCtgcattttaatgtttattatagaAACCTTTTCTCTTACCAAGGCTAGGCTTATTTGATCAACAATAAAAGGTtggaaatattattacaatattatatgaTGTTTCTTATTGAATGTCGTGCAATTTATGTATGTGATTCAAATTggaattttcagcattattactccAGTATTTAGCGTCACATGACTAttcagaaatcattgtaataGTATGATCTGCTGTATTATGATCAGCTATTATAAATATTCAACCATTAATGATGATTCAATTATCAATGTTGTGAACATTTATTTCCTGCTTCATAGTTTTGAGGAAATTGtgtaacatttaactttttagaattcactgataaaatgaaaaaacagataaaaaataatgtgtttatttattta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002820 lncRNA upstream 348562 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 400804 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 651572 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003048 lncRNA upstream 651572 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00002819 lncRNA upstream 812346 14607834 ~ 14609880 (+) True XLOC_000190
TCONS_00003051 lncRNA downstream 1137641 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 1235764 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 2472734 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 2529789 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 2529789 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000349 mRNA upstream 136771 15258641 ~ 15285455 (+) True XLOC_000208
TCONS_00000348 mRNA upstream 164911 15226268 ~ 15257315 (+) True XLOC_000207
TCONS_00000345 mRNA upstream 197888 15204633 ~ 15224338 (+) False XLOC_000206
TCONS_00000346 mRNA upstream 198675 15216659 ~ 15223551 (+) False XLOC_000206
TCONS_00000347 mRNA upstream 198675 15216988 ~ 15223551 (+) True XLOC_000206
TCONS_00000350 mRNA downstream 637562 16073887 ~ 16220234 (+) False XLOC_000210
TCONS_00000351 mRNA downstream 691500 16127825 ~ 16220126 (+) False XLOC_000210
TCONS_00000352 mRNA downstream 708290 16144615 ~ 16220235 (+) True XLOC_000210
TCONS_00000354 mRNA downstream 960545 16396870 ~ 16455921 (+) False XLOC_000212
TCONS_00000355 mRNA downstream 960545 16396870 ~ 16458257 (+) False XLOC_000212
TCONS_00000343 other upstream 654556 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 677487 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 684662 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000340 other upstream 691836 14730296 ~ 14730390 (+) True XLOC_000198
TCONS_00000339 other upstream 698976 14723156 ~ 14723250 (+) True XLOC_000197
TCONS_00000353 other downstream 725779 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000357 other downstream 1022200 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000364 other downstream 1164373 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 1332358 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 2077190 17513515 ~ 17522176 (+) True XLOC_000219

Expression Profile

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