XLOC_000190


Basic Information

Item Value
gene id XLOC_000190
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14607834 ~ 14609880 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002819
GAATCTCTGGAGAACAGACTTACTGGTGGCTACCAGAGGAGAAAGGAACAAACGTAGTCCAATCTACCGTTGGCTAGCTAGATCTACGTTTTGCATACAAGGAGAAGCTTCACTGGATGATCGCAGACACATCTGCTCAAGCTGAGAAGAACAAGAGGAGCAAACTTTGCTTTGAACACAACATCGTTTGGCAGAGTCTGAGGAGGCTGTCTGATCATCAACCTCTGATAGTGATGCGATACCATTGTGTCCAGCAGTGCGAATGTTGGTGGCAGGAAAACAGCTACCAACAAAACTAGTGGATCCTGGTGAAAACTGCAGTTGTCCCTCTGGGCTAAGAAGTCAAAGTCCTCTCGAGTCAAGGAAAAGTTGAATACATGTGGTCAACATGCATGTCTACAACAGTTCAAGCTATCTTAATTAgatttgcagattttgttttgtgtaaaaataatgtaatgatTTACGTTGGTGTGATTGGTCATTGTGGATGAATTGGACAAAATGTAACAATGTAaagttagcatgttgtttgcaAAAATTCAACTGCTTGGAGAGAATTATGGAACATCAGTAAGGGATATTGTTTTAAGTTAAGTGCCCACAGTATTGTTTTCAACAATACTGTGTGTTATAGGAATTGGGAACAATTCAATGTAACCGGAGCTGTTACactatttaaatattatgttttatattagcCTAAGTTAAGTACCCACAGTACTTTTTGCAATGATACTGTGTGCTATGGAAAGTTGGAACAATTCAATGTAAACAGAGCTGTCACAATATGTTTTTTACCATGCACTTCCTATCATAACTGAAGGATATTATTGGATCATGCATTTAAATGGTGATTGTTTAAATCCTTATGATAATCGAAGTTATGATATGTCTGGTTGTGATAAAACTGAAAAGGGAATGCTCTGTTTCCTGCAAACAGGACATTGCAATCAATGTTTGACTTCTGGAACTAGTGCatatgatttagctcaATTGCAATGGGAGATTTTAAGTCTACTGCTTAACTGGTTGTATCCAACCTATAATGGATTGGTTTAATACACATGTTTCTGCTACGTTAGAAAGATGTGCCTGAAGTATGTTCGAAGTTTGGTTCTTCGTTGAGCGAGGGACCGAGTgtaacaaattatatattttttgtttttcttctgttgcgCTCAACAAACAACCAAATGAACAGAGAAGGGTCTCATGACCTTAGGGTTAACTTCACACCTTTCTTCAAATTTCAGGAGGTAAAATATTGACACTTAAGCATGACCAAATAACCAGAGAAGGGTCTCCGGACCTTAAGGTTAACTTTCTCCAAATTTCAGGAGGTAGAATATTGACTCTAGATAATCATGCTGACAATACAAACCTCAAATTAGTGCTTTAcaatcagaaataatgtgcaaCTAGCTGAGAGAGGAGGTGGGCCTGATCAACTCACACTTCTCTCTTACCTATGAGGCCAACCTTTGGCTAGCACCCAAATATTGACTATAAAGATGAGGGTTTCTTGCTGAAACATTGGAAGCTCAGCCGTGGGATAAGCGCGCATCGCCCGGCATTCTCGGACATACGTGTTGGTTTTCCAATGTGACTGCAACGGGCTCCCCAGTCTTTGAAGAGGAAAATGATGGCACGTCTCTGAGGTTGTATATACTTGTATCAAATTGCTTGAAGTTTTCATTATCTGTCTTTTATTCATGTAATCTCATCTTTATTTCGCATTATAAGCCTTTTAtgcaattttgttgtattttgattaATGATGTTCATGAGTATGATTgatgattattgaatattattgtgataattgATATCAGCTGTGTGTACCAGCAATAAACAGTTGTATTGCTTGATTAGTATGGTGTATGGACCATTATTGGTGCCTTCTCTTGTCGATTAGCACCACACTTGTCTCACTTGCATAAACACATACCATACTAAAACCTTTTTGGTATGCTGAAACATTTTACATACTAAAATTTGGGGCATACTAAAAC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0042559 pteridine-containing compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0034312 diol biosynthetic process biological_process
GO:0046146 tetrahydrobiopterin metabolic process biological_process
GO:0003015 heart process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0005901 caveola cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002819 True 2015 lncRNA 0.38 2 14607834 14609880

Neighbor

gene id symbol gene type direction distance location
XLOC_000189 stim2a coding upstream 119760 14466860 ~ 14488074 (+)
XLOC_000188 rbpja coding upstream 143814 14454663 ~ 14464020 (+)
XLOC_000187 slc34a2a coding upstream 164932 14432434 ~ 14442902 (+)
XLOC_000186 chic2 coding upstream 191399 14406098 ~ 14416435 (+)
XLOC_000185 fip1l1b coding upstream 203279 14382584 ~ 14404555 (+)
XLOC_000191 CR847936.1 coding downstream 48921 14658801 ~ 14660280 (+)
XLOC_000192 CR847936.5 coding downstream 63897 14673777 ~ 14673871 (+)
XLOC_000193 CU138548.10 coding downstream 84681 14694561 ~ 14694655 (+)
XLOC_000194 CU138548.1 coding downstream 91856 14701736 ~ 14701830 (+)
XLOC_000195 CU138548.8 coding downstream 98996 14708876 ~ 14708970 (+)
XLOC_000182 BX530018.3 non-coding upstream 270521 14337211 ~ 14337313 (+)
XLOC_000177 NA non-coding upstream 524735 13997130 ~ 14083099 (+)
XLOC_000175 NA non-coding upstream 1125325 13478337 ~ 13482509 (+)
XLOC_000173 CT009746.1 non-coding upstream 1604767 13002978 ~ 13003067 (+)
XLOC_000172 NA non-coding upstream 1670745 12924626 ~ 12937089 (+)
XLOC_000196 CU138548.9 non-coding downstream 106136 14716016 ~ 14716110 (+)

Expression


Co-expression Network