XLOC_000189 (stim2a)


Basic Information

Item Value
gene id XLOC_000189
gene name stim2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14466860 ~ 14488074 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000332
ATGCAGAAGTTCTGCTTGACGGTCCTGCTGGTGCTGCGCGGCCTGATCATCTGCGTCTGCTCCAGCGATCAAGCACAGCAGCAGCCCGGACTCAACAGAGACACCACTGTGACCCCCATAGATACATGTCTACAAATGAGTCCTCCATGTATTACGGAGGCGGATCGATTCAGCCTGGAGGCCCTTCAGCACATCCACAGAGAGATGGATGATGATCAGGATGGAGGCATTGAGGTGGAGGAGAGTGTGGAGTTCATCATTGAAGACATGCAGCAGCAGCAACAGGCAAACAAGCATAGTAAACTCCATCACGAGGACCAGCATATCACTTTAGAGGAGCTTTGGAGGAGCTGGAAATCTTCTGAAGTTCATAACTGGACACAGGAGGATGTATTACAGTGGCTAAGAGAGTTTGTGGAGTTGCCTCAGTATGAAAAGAGCTTCAAAGAGCTGCGTGTCAGTGGAAACACTTTGCCCAGAATTGCTTCCAATGAGCCATCATTCATGAGCAGCTATCTGAAGATCCAGGACCagcaacacaaacaaaaactcaAGCTCAAAGCCCTGGATGTAGTTCTGTTTGGTCCACCTATACGACCCCCACACAACTGGTTGAAGGATGTTCTTCTGATTGTGTCTATAGTAATGGGAATTGGTGGCTGCTGGTTTGCACATGTACAGAGTAAATCATCTAAGGTGCACATTTCAAAGATGATGAAGGATCTGGAAAGCTTGCAGAGAGCTGAACAAAGCCTCAGAGATTTACAGGAGCAGTTGGAAAAGGCCCAGGAGGAGAAGCGCACAGTGACGGTAGAGAAGAAGAATCTGGAGGAAAAGATGAGGGATGagattcagggagctcaggaagAAGCAAACCGTCTGCACAGACTGCGAGATGGAGCTGTGACTGAACTCAGCCGTCTGTGGTATGCGGAGGAGGAGCTCGAACAGGTGCGCGGTGCACTGAAGAGGGCAGAGAAAGATATGCAGACCCTTTGGTCAGTTCCTGAATCCTTGCAGCTGTGGCTACAGCTCACCCATGAGGTGGAGGTTCAGTACTACAACGTCAAGAAGCAAAGTGCAGAACAACAACTCATCACAGCTAAAGATGAGGCAGAGAAGATCAAGAAGAAAAGGAGTTCAGTGTTAGGTACCCTACATGTTGCACACAGCTCCTCGCTGGATCAAGTGGACCAGAGAATTCTGGAGGCCAAGAATGCTCTCGCAGAGGTGACTGCGTGTCTACGGGAGCGTCTGCACCGCTGGCAGCAGATTGAGAGCTTGTGTGGTTTTCCTCTGATGAAAAATGCAGGTCTGCCAAATCTCACCGCTACACTCTACCCAGACCCCAACTGGATGCTCATGCCTCGAGCTGCACTGCAGTCCTACCAAGTGCCTGTTTCAGTGGAGGACATGGAGGAGGAAATGCCACAGATTATACCACAGATTCCTGTCACAGTTGCACCTTTGAAGTGTTCTCCACGGTCTCTGGTTCGCTCCCGTCGATCTGGGCATATGGTGCCATCTCCTGTCATTGTATCACCTGACCCAGACCTCCTGATACCCATACGATCTCCACAAAGCCGATATGGAGATGATGAAGAAGGACATATCAAATACACCCCTATTGTGAAACAGGAGTCAATGGAAACATCTTCAGATACAGAGTCCATCGGGTCCTCCATTAGCCGAAAGTACAGCACCCTTGACGTCCCACCACGAAGAAAATACATTTTCTCTGATAAAATGCCTCGAAAGATCTCCCTGGATGAACAAGAGGACACTTCCTCACGCAAAACTTCTCAGGAGGAGATGGACGAGTCTTTGATGGTGACCACCTCAAGGAAAGCATCACGAGAGGAACTGGACATCAATACTCCATCAAGAAAGACATCTAGAGAAGAATTAGACGAGCCTCCTAAACAACTGTTTAGAGGAGAAACCGAGATTTGCTTTGATTCAAGGAAATTACCCAGAGATCTGTCTTTAGATTCGACAGTGAGGTACTACTCTACAGAAAAGATGTCTCCAGTTGCCATCAGCATGGACAGTCAAAGACAACGATCGATCAGAGAGAGAAAAGATCACATGGACAGCATTTCTAGAGTTATACCAAAAGCAGAGTTTGATATAGATGCCACAACTGGATCTAGATATGCAGATGCCTTACTCAACACATCCATTAAACACAAAGAAAACCTGGACTTTGCAAGTAACATCCAGCGAGGAAGAATGTTTAGGGAAAACTCCTTTGATTCCAACTTTGATAGTTCAGTGGAAAGCTCGAAGAAATTGAAGACGTTAGCCAGAGCAGACCTATCCAAAGACATCCCTTCACGGATGATGGCTCAAGATGAATTCGATGCGTCAGCAGATTTGGAAAGACTAAAAATGAGAGACATTGCGATGGAGACTGCTTCGAGGAACATACTGAGAGAAGAGTTTGATAGAAGCAAGTCCTTAAAAGAGAGCAGGGATATCCGGATGGAAATTCCATCAAAAAAACTCTTCCGGGATGAGCAAGAGGTCGCGATGGAGACACAACGGATTCAGCAGAAATTAGACAGCTCTCTGGAAACTCCAATTAGTAAAATACAGAGAGAGCTCATGGGTCTGTCTGTGGAGGCTCCAAGGCGCAAGATATCGCAGGAGGAGTTTGTTGTTACAAACCCAGGACAGTTTGGCCCTCCTGACCTCACCGCCAGTTCTTTGATGCTCTGCAAACCACAATTGGATTCGATCAGCACACTAGTGTATGATGGGATTCTGGAAAAGTCCTATGAAAGCCCTCTTATGTCTAGTCCTGGCGATCTCAGTCACGCTGCATCAGTTTCTAGCTCTATTCAAAGTCTTGTGGGAAATGAAGGACAATCAGCCCATTCGTCATCTTCAGAATCTGGCGGAAAAGAAAAAGGCAAGAAAACCTCTAAGCTCAAGAGTTTGTTTAAGAAGAAAAAGGAGAAGGATAAAGACTCATGAAGGTCAACAAGTAGGAATTTAGTCACTATTAAAATGTCTGAAGATCTTAGAAAACTGTCTTAGAAATCAGCCTCATTGACCTGCCTTGTATTTAGatgttctcaaaaaaaaaaaaaaaaaaagaatctgctGGATTTTATAAGAATCATAAAATAGCCTGTTTAATGCAGTCTGGTAAAACAATACAGCAGAACTCCATTTTGGATTGGATTCATATAAACCAGTATACGGTTCCAGTGTTTTTAAAGTAATACCACAGGTGAATTATGTGCTATCCAAGGAATGTTTCATGTAACACTTGCTCATTTTACAAATCTGAACAACACTTTtccttgataaaaaaaaaaaaaaaacattttgtctgTGGAAAGTTCCATCCCGGAACCATATGTGCCAGTAGAGAACCTATTTTAAAGGGTGTACATGCTCAGTCCAGTAATCTAAATAAGACACTATTGAATGATTTTAAGGTAGAGAAACAACACTGGCTCATTGGAACtatgtgcttcagcctacatttttgtgaaactaaAGATGTAATTAAACAGACATTTGACTGCAGTTAAAAAGAACACTGCCAGGCAGTATGATGCCAACAAATTGGATTATTTCCATACTGTACAAATAAAGGATTATATTTGTGCCATTTTTGGACAATGCCAGATAAACACCACAAAAACCATAATGATGTATGAATTATGAAATGGTAATCAAAAAACAATTGCCTCGCCTGTTTATCTTCATATTGACAACGTTTTTGATGTGATCAGTTTGCTCTGTAACTCACTTTGTATAGTGTTGTACTTGTGCTGCTTAGTTTTGAGTCTGGTAAAGCATGTTTCTACCAAAAAGACGAAAACAATGTGAAATCAAGGTATAACATGGCCCCATGCACCTTTCTGATACGTTTGCTTTTGAAACCACTATAGGGtacatgcacagctagtgtttccaGTGAACTGTTAGTGTGACTTTTTAAGTTTTGTatgattccttttacagcatcaatgttgtaaagtaattaaaatacaatcagtaaataaacttcggcattaatttagttgttcaagtgtaaactGTTCAGgatcaccaggggcctcatgtatcaacgatgcgtacgcacaaaaactttgcgtacgccaggtttcacgctcagaatcgctcacgtttggatttactaacaatgaactgaatgtgggaatgtgcgcagcttcacggcagctttctggctggcgtacgcacattttttgtgcgtgtctgttttatttccattgttgactcctagaggcagttgtgttaaattcctctctacaaagtgtctgagccttgcaatggcagctgtatgagacgggttcagcaggtatataaggtttccataccatacatttgaccagctaaacattaaagcacaatttgcagcggtcgcctgttttcccaatgtaatctgagctatctaccgcacgcacattgctataaagacactatctgaagatgaatttgcatgcgtgaatcagaaacatttccattcaataaatgtgcaaataaaatatgatgcttattgatataaacttattgatgattcctacttgtctttcttgtgataaattgttggcaaaatctgatatgtagcgggggaaaaaacaagaaagagatcatcagacgctggattcgagccgagttcaagcttgaacgtatcaattcatgatcacatgcgtcttacgagtagcgccactgagactgttaagcgtcctgcaacattttacagatataaaccacactatttcttttttttaatgcactaagtgcgatgttcagacccaactgtgttgaccgcatcagctaaactctcccactctatttttttcatttgttgttaattccggagaacaaacttgcaaataacaccgcttttctccggtctaccaccgaaagcagcaccttcaattcacattctcttcaaagtttctctttttgcttgcttttgccattgctttttcgttgggtttttccattagcatagtcattggcatattcatacgggggaggaggcagggaggagttttgcgctcgtgcatgttgtgctcagttttacgttcattcagatgtacaaaagaatatgcgtgagattcggcgtacgcagtgtttcatacatctgaatttttttctgcgtacgcacatttacagctttgtgcgtacgcaatgttttagtaagatttccacgcaagtcttcgtacatgaggccccaggtgagcgcagaaacaccattgaaaatactggagtaaaataaatgttcataatttCAAGACATGGTGTGGGtaaattgattttttaaattgttttttttttttttattgtatgcccACATTCACAAAATATTAACATCAAAACGTATAAATGTATTACAGAGAGTGTACTTGGGATGGAAAGTAACaagaaattaatgtaaaaaaaaatagttaaacaaataaaagtacaGTCACATCATCTTAGAGCAGTCTTTAAGTGTAGGttataacaaaaatgtaaatgaatgacaAGGATCCTGTGTTAATTTAAGAAATCTCTTTTATGTACTCTCAAAGGGGAGGCGAAAATTcattttaatgcagtgcttcttgtacaatctgagaccttTTATGTCATATATCAATCTGACATTggagttcaataaaaaaaaaaaaacagaccgtAAATGTGCTGATTTTGTAACTGCATATAGTCCACCGGAAGTGCTTGAGCCAGGCTATTGCAAAGTTAAAAGTCTTTCCGCATAAACCCTACTGGTTAAGTTTAGTGGAGAGTTTAGTTTTTAGCTGGTGTAGGTGAACTGTATGACAAGCCCTGCCTTTCAACAGTATGAAAAGGAAGTGTATTTGAAacgtataataaaatttactgaatacatttcagatttgcaaaaaatgtaaacagtgcccactagtggatttgtcatctgaaagtGCAATGGAATGTACTATGagcaaagtattttacattttgcaaaaatgtaggctgaagcatgtaTTCACTATAAACCTTATTTGAACTTGAAGAAATTATGACAAATACTGTACTTAACTACTGCACAACAACCCAATTCTATAGTGCCATATAATTGTAACATGCTTAACTTAATTACTTAAATTACTtaaatcttaatttatttatttgattgtttgtacAGTCATGTAATGGCAGGTTTTGATTGtgctatatttgtatatatattttaaaaaaaaaagccattaaatataaaaaaaaaatgttttagtgtcCAATGATAGTAATTTATGTAATCAAACTTTCAGCTAGGCATTTGTTTGCTAGTAATCATTCAAAAATGTAAAGCTCAATGAAGTaggatatttgtatttatataaattacagtTTATTTGGATGCAAACACTGACAATTACTTTCTTGAATGTAGTTTACAGACTTAACTTACATTTAACACTTTTACACAGACTTTTCTGACTTgtgtaagtattttattttattttatcagtcaGTTCATTCAGTGGTGGAGTCCGTCTGATTTAACTGTGTAGCACTTTTGATATTTTTTCCTCCCCAAGCGTGCAATATTATTAATTGAGAACAAATCTCTTTGGAATTTTATATCTATGTATACATTCAAGCCTGCAATTATACATACCCTGTGAAATTATGACCTAAAGTTAGTTTTATTCAACCACAGTTTTTCTTTagacaggcttctcccaaaagttaataagacgatgtacaagaggcatcactGTGGAAAAAATATATCTTTCTCAGCTATTATTTAcaattgaatgaataatttcgGGCGTGACTGTATgtatgtaatttaaaatattttgtgtttgtttctgttctgTGTTTTCCgtcaaaaaaatacaataattggatttttattgaatgtttaacCTTTCTGATGTGCATTGCCATGGTTAAGAGAACTTTATAACCTGGAACTAAATAGCATCTGGATTTGCACGATTCATAACAATAGCTGTCTAAACATTTCAAACGATGAATATTATTGCACAATTTCTCAAACATATTATCTTAAGCAATATCAAATAAACAAGATGTTTACAAAGAGATCTGTAAATCTCTTTTTATTTCAGCTGATTTGTCAATATGCTGTTTGGATGGGCAGATGTTTTAACCTCAACATTCACttcctttttcagtttatttcttaGTTGTTGTTTGATAAACGACTGCTGTGCCACTATTTTGAATCAAGTGTTGTGAAAGTGTCTATTCAGGAAGCCTTTCAGTGTCATGACCTTTATCCTAAATGTCATGTACCCAAAAtaatattcaaacaaacattGGTTTTTCAGTTTGATACAGGTCAGACGGCCATGACTCATTTAGAAAGCTCCACTGAGATTCAGAGATTTAATTGCACAGTCAAACGTCTGATTCTGCATTTTCCAAAACCAGTTtcaagttgtttttgttttatgttttcaaAATGGGGGTTTCCAGAGTGTTCTGATCACAAGTTCTTGTTAATTGTATATTGTGGGTTTTTTAACCACAACTGTTTCCAGTGGTTTCAGAAAATGTGtttcactttgtgtgtgtggttaaataaatactgtttaaatttaAGTAAGCAAGGAGGTTACAATTGACTCTAATTCGCAGTGTTTACTCTGTTTCTGGTTAATTATATGTTTGGCAACACATCCTTTAACTCAAACTGCTTGTTATTGATTGTTACTTATTACATTTGTTTGCATAACAGTATGTGAACTTACTCACTGACTTGCCCAAAGTTATGCAAACAAACGTAATAAGTGGCATTGTCTTTCACCAAAAAtccaattttaatacgattaagacaatactctgat

Function

symbol description
stim2a Predicted to enable calcium channel regulator activity and metal ion binding activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; head; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human STIM2 (stromal interaction molecule 2).

GO:

id name namespace
GO:0005246 calcium channel regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-765 Predicted to enable calcium channel regulator activity and metal ion binding activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; head; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human STIM2 (stromal interaction molecule 2).

Ensembl:

ensembl_id ENSDARG00000074867

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000332 True 7838 mRNA 0.39 12 14466860 14488074

Neighbor

gene id symbol gene type direction distance location
XLOC_000188 rbpja coding upstream 2840 14454663 ~ 14464020 (+)
XLOC_000187 slc34a2a coding upstream 23958 14432434 ~ 14442902 (+)
XLOC_000186 chic2 coding upstream 50425 14406098 ~ 14416435 (+)
XLOC_000185 fip1l1b coding upstream 62305 14382584 ~ 14404555 (+)
XLOC_000184 DRD5 coding upstream 92969 14372680 ~ 14373891 (+)
XLOC_000190 NA coding downstream 119760 14607834 ~ 14609880 (+)
XLOC_000191 CR847936.1 coding downstream 170727 14658801 ~ 14660280 (+)
XLOC_000192 CR847936.5 coding downstream 185703 14673777 ~ 14673871 (+)
XLOC_000193 CU138548.10 coding downstream 206487 14694561 ~ 14694655 (+)
XLOC_000194 CU138548.1 coding downstream 213662 14701736 ~ 14701830 (+)
XLOC_000182 BX530018.3 non-coding upstream 129547 14337211 ~ 14337313 (+)
XLOC_000177 NA non-coding upstream 383761 13997130 ~ 14083099 (+)
XLOC_000175 NA non-coding upstream 984351 13478337 ~ 13482509 (+)
XLOC_000173 CT009746.1 non-coding upstream 1463793 13002978 ~ 13003067 (+)
XLOC_000172 NA non-coding upstream 1529771 12924626 ~ 12937089 (+)
XLOC_000195 CU138548.8 non-coding downstream 220802 14708876 ~ 14708970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_04035454_04049805 STIM2A coding CI01000300 null 4034317 ~ 4049821 (+)