XLOC_000186 (chic2)


Basic Information

Item Value
gene id XLOC_000186
gene name chic2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14406098 ~ 14416435 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000329
GTTGATGTTTTGATCCGGACTTCTACCGTCGTTTCTCACTGCGGGCCGTGCGATCTGCATTACTGCCAATATTTGCGTAAGGTGTGCGAAGCGTTATCTTTCTCGGCGCTTCTTTCGGGAAGCATAGAGGCCGAGGCGGAGGGCGATGATGGAGGACTTTGACGAGATTTacgaggaggaggaagaggaagaggaggacgaGGACAGGGCCGCGGAGGAGCAGCTGCTCAAGTACGCTCCGGACCCGGTGGTAGTGCGCGGATCCGGACACGTCACTGTGTTTGGTCTAAGCAATAAATTTGAGTCCGAGTTTCCCTCAGCACTTACAGGAAAGGTGGCCCCGGAGGAGTTTAAGTCCAGCATAAACCGAGTGAACAGCTGTCTGAGGAAGGCTCTGCCGGTGAATGTGCGCTGGCTGCTCTGTGGATGTCTGTGCTGCTGCTGCACTCTGGGCTTCAGTCTGTGGCCCGTCATCTGTCTTAGCAAGAGGACGCGCAGATCCATAGAGAAGTTATTGGAGTGGGAAAACAGCAGATTGTATCACAAGCTTTGTTTGCATTGGAGACTCAGCAAAAGGAAGTGTGAAACCAACAACATGATGGAATATGTGATCCTAATAGAGTTTCTACCCAAGATCCCCATCTTCAGGCCGGATTAGCAGCGGCAGGCCTGCGGCGTGGTCTTCCTGAGGTGCCTTTCTCCGGTACTGTCATGCTTTTCTCTCGTGGCCTCGTCCCTTTTTCCCTCCACACTCTCGAGTAAGAGACTCACTTCACATCCGAGCGCCACTTTCAGCACTCCTCACTGAGAAAAACACTGTTTACAACCCACAAAACACACGGAGACTTCGTCCTGGTTCACAGGCTGCATGAAAACACACAGAGGGATCTTTTTATCGACTGCAGAGTCTGCGGAGAGGTCACCAAAGTCACTTCTGAAGCGTCTACAACACCACGATCACATCACAGAGTCTAAGCGTCTCCATGTTGCCGACGGGCATCACTGTGGAACCAACTGTAGGATTACTGTATTCATTCTGAAGACGAAATCTACGTGGACTGTTGGAGCTATTGCAGGATATCTGGTAGCTGAGAGCCAAATGGACACGGTCAATGCACAATACATATTCCTCCATCTCTCCTCACCAATGATCATCTTCATCTTCAATATACAAAGACAATCAAACACTGACTGTGCCACGCACCTTCTCCACTCTGACGGGACTTTCAGGAGCCGGATGTGGTCCAGGTGCACCGATAGTGATGCAGCACAGATTGGATCGGTTTGGCTGTTCTCTTGACTATTTTTTTACCCTTGTTTACTTGCTCAGTTTGAAAAGGTGAACAGCTGATGTTTGTGTGTTCGGGTGATTGTTTCTCTCTCTGTCCCGGAGATGTCCTTTTGCTTACAAATCGGAACATTTATAGGTTCGTCTGAAAAAGTTCATTAACAAgacaaaatctattttttaaaaacgTCACAAATGTTGTATTTTCTCCAGGGCAGGATGATCTCATTTCTTCatcttaatttaatgttttttttccacttaatttgtcttttttgttgttgttgttcgttttttcatctttgtttcaGTCCTGGGTCAGGTGTGAAGACTGAGCAAGTTCTATGCAGGCCTTTTCTCTTTTACTGAAATCTTGTGTAAATTGTAGGTGAATTAAGCAATGATCTCCCAGTACTAAAACAATTGGTCCTATTAGATCTGAAAACCTGACACTTAtgaagagcgtgtgtgtgtgtgattactgATATTATTACAGAAGTTACAATACCCTATCTAGTCTGATGTCATCCCGAATCCCAGGGACATCgtctttttatttttcagaaattaTTTCTGTGTATTTATGTACAACGTGTGTACAGAAATAAATATGCCCAACTT

Function

symbol description
chic2 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-778 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2).

Ensembl:

ensembl_id ENSDARG00000022690

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000329 True 1909 mRNA 0.46 6 14406098 14416435

Neighbor

gene id symbol gene type direction distance location
XLOC_000185 fip1l1b coding upstream 1543 14382584 ~ 14404555 (+)
XLOC_000184 DRD5 coding upstream 32207 14372680 ~ 14373891 (+)
XLOC_000183 crmp1 coding upstream 41388 14348399 ~ 14364710 (+)
XLOC_000182 BX530018.3 coding upstream 68785 14337211 ~ 14337313 (+)
XLOC_000181 ppp2r2ca coding upstream 99260 14283692 ~ 14306838 (+)
XLOC_000187 slc34a2a coding downstream 15999 14432434 ~ 14442902 (+)
XLOC_000188 rbpja coding downstream 38228 14454663 ~ 14464020 (+)
XLOC_000189 stim2a coding downstream 50425 14466860 ~ 14488074 (+)
XLOC_000190 NA coding downstream 191399 14607834 ~ 14609880 (+)
XLOC_000191 CR847936.1 coding downstream 242366 14658801 ~ 14660280 (+)
XLOC_000177 NA non-coding upstream 322999 13997130 ~ 14083099 (+)
XLOC_000175 NA non-coding upstream 923589 13478337 ~ 13482509 (+)
XLOC_000173 CT009746.1 non-coding upstream 1403031 13002978 ~ 13003067 (+)
XLOC_000172 NA non-coding upstream 1469009 12924626 ~ 12937089 (+)
XLOC_000192 CR847936.5 non-coding downstream 257342 14673777 ~ 14673871 (+)
XLOC_000193 CU138548.10 non-coding downstream 278126 14694561 ~ 14694655 (+)
XLOC_000194 CU138548.1 non-coding downstream 285301 14701736 ~ 14701830 (+)
XLOC_000195 CU138548.8 non-coding downstream 292441 14708876 ~ 14708970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_03994394_03997804 CHIC2 coding CI01000300 null 3994394 ~ 3998763 (+)