RNA id: TCONS_00000329


Basic Information

Item Value
RNA id TCONS_00000329
length 1909
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_000186
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14406098 ~ 14416435 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGATGTTTTGATCCGGACTTCTACCGTCGTTTCTCACTGCGGGCCGTGCGATCTGCATTACTGCCAATATTTGCGTAAGGTGTGCGAAGCGTTATCTTTCTCGGCGCTTCTTTCGGGAAGCATAGAGGCCGAGGCGGAGGGCGATGATGGAGGACTTTGACGAGATTTacgaggaggaggaagaggaagaggaggacgaGGACAGGGCCGCGGAGGAGCAGCTGCTCAAGTACGCTCCGGACCCGGTGGTAGTGCGCGGATCCGGACACGTCACTGTGTTTGGTCTAAGCAATAAATTTGAGTCCGAGTTTCCCTCAGCACTTACAGGAAAGGTGGCCCCGGAGGAGTTTAAGTCCAGCATAAACCGAGTGAACAGCTGTCTGAGGAAGGCTCTGCCGGTGAATGTGCGCTGGCTGCTCTGTGGATGTCTGTGCTGCTGCTGCACTCTGGGCTTCAGTCTGTGGCCCGTCATCTGTCTTAGCAAGAGGACGCGCAGATCCATAGAGAAGTTATTGGAGTGGGAAAACAGCAGATTGTATCACAAGCTTTGTTTGCATTGGAGACTCAGCAAAAGGAAGTGTGAAACCAACAACATGATGGAATATGTGATCCTAATAGAGTTTCTACCCAAGATCCCCATCTTCAGGCCGGATTAGCAGCGGCAGGCCTGCGGCGTGGTCTTCCTGAGGTGCCTTTCTCCGGTACTGTCATGCTTTTCTCTCGTGGCCTCGTCCCTTTTTCCCTCCACACTCTCGAGTAAGAGACTCACTTCACATCCGAGCGCCACTTTCAGCACTCCTCACTGAGAAAAACACTGTTTACAACCCACAAAACACACGGAGACTTCGTCCTGGTTCACAGGCTGCATGAAAACACACAGAGGGATCTTTTTATCGACTGCAGAGTCTGCGGAGAGGTCACCAAAGTCACTTCTGAAGCGTCTACAACACCACGATCACATCACAGAGTCTAAGCGTCTCCATGTTGCCGACGGGCATCACTGTGGAACCAACTGTAGGATTACTGTATTCATTCTGAAGACGAAATCTACGTGGACTGTTGGAGCTATTGCAGGATATCTGGTAGCTGAGAGCCAAATGGACACGGTCAATGCACAATACATATTCCTCCATCTCTCCTCACCAATGATCATCTTCATCTTCAATATACAAAGACAATCAAACACTGACTGTGCCACGCACCTTCTCCACTCTGACGGGACTTTCAGGAGCCGGATGTGGTCCAGGTGCACCGATAGTGATGCAGCACAGATTGGATCGGTTTGGCTGTTCTCTTGACTATTTTTTTACCCTTGTTTACTTGCTCAGTTTGAAAAGGTGAACAGCTGATGTTTGTGTGTTCGGGTGATTGTTTCTCTCTCTGTCCCGGAGATGTCCTTTTGCTTACAAATCGGAACATTTATAGGTTCGTCTGAAAAAGTTCATTAACAAgacaaaatctattttttaaaaacgTCACAAATGTTGTATTTTCTCCAGGGCAGGATGATCTCATTTCTTCatcttaatttaatgttttttttccacttaatttgtcttttttgttgttgttgttcgttttttcatctttgtttcaGTCCTGGGTCAGGTGTGAAGACTGAGCAAGTTCTATGCAGGCCTTTTCTCTTTTACTGAAATCTTGTGTAAATTGTAGGTGAATTAAGCAATGATCTCCCAGTACTAAAACAATTGGTCCTATTAGATCTGAAAACCTGACACTTAtgaagagcgtgtgtgtgtgtgattactgATATTATTACAGAAGTTACAATACCCTATCTAGTCTGATGTCATCCCGAATCCCAGGGACATCgtctttttatttttcagaaattaTTTCTGTGTATTTATGTACAACGTGTGTACAGAAATAAATATGCCCAACTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-778 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2).

Ensembl:

ensembl_id ENSDART00000030083

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003046 lncRNA upstream 322999 13997130 ~ 14083099 (+) True XLOC_000177
TCONS_00002818 lncRNA upstream 923589 13481635 ~ 13482509 (+) False XLOC_000175
TCONS_00002817 lncRNA upstream 923589 13481635 ~ 13482509 (+) True XLOC_000175
TCONS_00003045 lncRNA upstream 923864 13479133 ~ 13482234 (+) False XLOC_000175
TCONS_00002815 lncRNA upstream 924562 13478337 ~ 13481536 (+) False XLOC_000175
TCONS_00002819 lncRNA downstream 191399 14607834 ~ 14609880 (+) True XLOC_000190
TCONS_00003047 lncRNA downstream 353066 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003048 lncRNA downstream 353172 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00003049 lncRNA downstream 435187 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00002820 lncRNA downstream 656965 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00000328 mRNA upstream 1543 14382584 ~ 14404555 (+) True XLOC_000185
TCONS_00000327 mRNA upstream 32207 14372680 ~ 14373891 (+) True XLOC_000184
TCONS_00000326 mRNA upstream 41388 14348399 ~ 14364710 (+) True XLOC_000183
TCONS_00000324 mRNA upstream 99260 14283692 ~ 14306838 (+) True XLOC_000181
TCONS_00000323 mRNA upstream 151932 14253118 ~ 14254166 (+) True XLOC_000180
TCONS_00000330 mRNA downstream 15999 14432434 ~ 14442902 (+) True XLOC_000187
TCONS_00000331 mRNA downstream 38228 14454663 ~ 14464020 (+) True XLOC_000188
TCONS_00000332 mRNA downstream 50425 14466860 ~ 14488074 (+) True XLOC_000189
TCONS_00000333 mRNA downstream 242366 14658801 ~ 14660280 (+) True XLOC_000191
TCONS_00000344 mRNA downstream 721466 15137901 ~ 15203357 (+) True XLOC_000205
TCONS_00000325 other upstream 68785 14337211 ~ 14337313 (+) True XLOC_000182
TCONS_00000318 other upstream 1403031 13002978 ~ 13003067 (+) True XLOC_000173
TCONS_00000315 other upstream 1552835 12848061 ~ 12853263 (+) False XLOC_000171
TCONS_00000316 other upstream 1553085 12848072 ~ 12853013 (+) True XLOC_000171
TCONS_00000309 other upstream 1670064 12735920 ~ 12736034 (+) True XLOC_000169
TCONS_00000334 other downstream 257342 14673777 ~ 14673871 (+) True XLOC_000192
TCONS_00000335 other downstream 278126 14694561 ~ 14694655 (+) True XLOC_000193
TCONS_00000336 other downstream 285301 14701736 ~ 14701830 (+) True XLOC_000194
TCONS_00000337 other downstream 292441 14708876 ~ 14708970 (+) True XLOC_000195
TCONS_00000338 other downstream 299581 14716016 ~ 14716110 (+) True XLOC_000196

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_03994394_03997804.mRNA True 1278 mRNA 0.46 4 CI01000300 3994394 ~ 3998763 (+)