RNA id: TCONS_00000315



Basic Information


Item Value
RNA id TCONS_00000315
length 1038
RNA type processed_transcript
GC content 0.37
exon number 6
gene id XLOC_000171
representative False

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12848061 ~ 12853263 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


attgaaggacaggatttcatattgagaagatgtactgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcaggaagaaatgtgagatccaagttctacactgcattggacacacactgctcgtttgattgaaataaaaataaaaaaaacaggagaaaattgcagaagaaaactagaagaaattttcaacatgttaattcaaaggtcatctggcagcagttctccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtgtgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactttgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaatgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcgtcgagtgcctatatactgctgtgctttatgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacactttttttttttttttttaccaaaaaagtgtattgtgatttatagggttgtcaaaagtattgagtttggtaccaatcggtactgaaataaataaaaaaaaaagtccatccatttcccactaacattgcaagaactgattggccattgtgttcacatgctcagtagatatgactgattggctttgaaggtcattatttttaccacacttcaccactgttcaccaggtgcaaagatacaaagacactggataacttcaaagcactg

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172433

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00003038 lncRNA upstream 171039 12672985 ~ 12677022 (+) False XLOC_000168
TCONS_00003039 lncRNA upstream 171039 12672991 ~ 12677022 (+) False XLOC_000168
TCONS_00000308 lncRNA upstream 171039 12672991 ~ 12677022 (+) True XLOC_000168
TCONS_00000298 lncRNA upstream 490395 12348267 ~ 12357666 (+) False XLOC_000164
TCONS_00000297 lncRNA upstream 492496 12348237 ~ 12355565 (+) False XLOC_000164
TCONS_00003040 lncRNA downstream 71363 12924626 ~ 12937089 (+) False XLOC_000172
TCONS_00003041 lncRNA downstream 71404 12924667 ~ 12937089 (+) False XLOC_000172
TCONS_00003042 lncRNA downstream 71454 12924717 ~ 12937089 (+) False XLOC_000172
TCONS_00003043 lncRNA downstream 71463 12924726 ~ 12937089 (+) False XLOC_000172
TCONS_00003044 lncRNA downstream 78031 12931294 ~ 12937089 (+) False XLOC_000172
TCONS_00000313 mRNA upstream 50651 12766351 ~ 12797410 (+) False XLOC_000170
TCONS_00000312 mRNA upstream 51483 12763920 ~ 12796578 (+) False XLOC_000170
TCONS_00000314 mRNA upstream 54468 12767318 ~ 12793593 (+) True XLOC_000170
TCONS_00000311 mRNA upstream 54603 12763461 ~ 12793458 (+) False XLOC_000170
TCONS_00000310 mRNA upstream 84091 12763461 ~ 12763970 (+) False XLOC_000170
TCONS_00000319 mRNA downstream 234534 13087797 ~ 13089102 (+) True XLOC_000174
TCONS_00000320 mRNA downstream 1077362 13930625 ~ 13952084 (+) True XLOC_000176
TCONS_00000321 mRNA downstream 1167182 14020445 ~ 14026780 (+) True XLOC_000178
TCONS_00000322 mRNA downstream 1220628 14073891 ~ 14158563 (+) True XLOC_000179
TCONS_00000323 mRNA downstream 1399855 14253118 ~ 14254166 (+) True XLOC_000180
TCONS_00000309 other upstream 112027 12735920 ~ 12736034 (+) True XLOC_000169
TCONS_00000307 other upstream 304586 12543359 ~ 12543475 (+) True XLOC_000167
TCONS_00000306 other upstream 416619 12431328 ~ 12431442 (+) True XLOC_000166
TCONS_00000301 other upstream 452774 12394209 ~ 12395287 (+) False XLOC_000165
TCONS_00000299 other upstream 490985 12348358 ~ 12357076 (+) True XLOC_000164
TCONS_00000318 other downstream 149715 13002978 ~ 13003067 (+) True XLOC_000173
TCONS_00000325 other downstream 1483948 14337211 ~ 14337313 (+) True XLOC_000182
TCONS_00000334 other downstream 1820514 14673777 ~ 14673871 (+) True XLOC_000192
TCONS_00000335 other downstream 1841298 14694561 ~ 14694655 (+) True XLOC_000193
TCONS_00000336 other downstream 1848473 14701736 ~ 14701830 (+) True XLOC_000194

Expression Profile


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