Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000319 |
| length | 1020 |
| RNA type | mRNA |
| GC content | 0.36 |
| exon number | 2 |
| gene id | XLOC_000174 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 13087797 ~ 13089102 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050420-254 | Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000170314 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003040 | lncRNA | upstream | 150708 | 12924626 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00003041 | lncRNA | upstream | 150708 | 12924667 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00003042 | lncRNA | upstream | 150708 | 12924717 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00003043 | lncRNA | upstream | 150708 | 12924726 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00003044 | lncRNA | upstream | 150708 | 12931294 ~ 12937089 (+) | False | XLOC_000172 |
| TCONS_00002816 | lncRNA | downstream | 389235 | 13478337 ~ 13481536 (+) | False | XLOC_000175 |
| TCONS_00002815 | lncRNA | downstream | 389235 | 13478337 ~ 13481536 (+) | False | XLOC_000175 |
| TCONS_00003045 | lncRNA | downstream | 390031 | 13479133 ~ 13482234 (+) | False | XLOC_000175 |
| TCONS_00002818 | lncRNA | downstream | 392533 | 13481635 ~ 13482509 (+) | False | XLOC_000175 |
| TCONS_00002817 | lncRNA | downstream | 392533 | 13481635 ~ 13482509 (+) | True | XLOC_000175 |
| TCONS_00000313 | mRNA | upstream | 290387 | 12766351 ~ 12797410 (+) | False | XLOC_000170 |
| TCONS_00000312 | mRNA | upstream | 291219 | 12763920 ~ 12796578 (+) | False | XLOC_000170 |
| TCONS_00000314 | mRNA | upstream | 294204 | 12767318 ~ 12793593 (+) | True | XLOC_000170 |
| TCONS_00000311 | mRNA | upstream | 294339 | 12763461 ~ 12793458 (+) | False | XLOC_000170 |
| TCONS_00000310 | mRNA | upstream | 323827 | 12763461 ~ 12763970 (+) | False | XLOC_000170 |
| TCONS_00000320 | mRNA | downstream | 841523 | 13930625 ~ 13952084 (+) | True | XLOC_000176 |
| TCONS_00000321 | mRNA | downstream | 931343 | 14020445 ~ 14026780 (+) | True | XLOC_000178 |
| TCONS_00000322 | mRNA | downstream | 984789 | 14073891 ~ 14158563 (+) | True | XLOC_000179 |
| TCONS_00000323 | mRNA | downstream | 1164016 | 14253118 ~ 14254166 (+) | True | XLOC_000180 |
| TCONS_00000324 | mRNA | downstream | 1194590 | 14283692 ~ 14306838 (+) | True | XLOC_000181 |
| TCONS_00000318 | other | upstream | 84730 | 13002978 ~ 13003067 (+) | True | XLOC_000173 |
| TCONS_00000315 | other | upstream | 234534 | 12848061 ~ 12853263 (+) | False | XLOC_000171 |
| TCONS_00000316 | other | upstream | 234784 | 12848072 ~ 12853013 (+) | True | XLOC_000171 |
| TCONS_00000309 | other | upstream | 351763 | 12735920 ~ 12736034 (+) | True | XLOC_000169 |
| TCONS_00000307 | other | upstream | 544322 | 12543359 ~ 12543475 (+) | True | XLOC_000167 |
| TCONS_00000325 | other | downstream | 1248109 | 14337211 ~ 14337313 (+) | True | XLOC_000182 |
| TCONS_00000334 | other | downstream | 1584675 | 14673777 ~ 14673871 (+) | True | XLOC_000192 |
| TCONS_00000335 | other | downstream | 1605459 | 14694561 ~ 14694655 (+) | True | XLOC_000193 |
| TCONS_00000336 | other | downstream | 1612634 | 14701736 ~ 14701830 (+) | True | XLOC_000194 |
| TCONS_00000337 | other | downstream | 1619774 | 14708876 ~ 14708970 (+) | True | XLOC_000195 |
