RNA id: TCONS_00002819


Basic Information

Item Value
RNA id TCONS_00002819
length 2015
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_000190
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14607834 ~ 14609880 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATCTCTGGAGAACAGACTTACTGGTGGCTACCAGAGGAGAAAGGAACAAACGTAGTCCAATCTACCGTTGGCTAGCTAGATCTACGTTTTGCATACAAGGAGAAGCTTCACTGGATGATCGCAGACACATCTGCTCAAGCTGAGAAGAACAAGAGGAGCAAACTTTGCTTTGAACACAACATCGTTTGGCAGAGTCTGAGGAGGCTGTCTGATCATCAACCTCTGATAGTGATGCGATACCATTGTGTCCAGCAGTGCGAATGTTGGTGGCAGGAAAACAGCTACCAACAAAACTAGTGGATCCTGGTGAAAACTGCAGTTGTCCCTCTGGGCTAAGAAGTCAAAGTCCTCTCGAGTCAAGGAAAAGTTGAATACATGTGGTCAACATGCATGTCTACAACAGTTCAAGCTATCTTAATTAgatttgcagattttgttttgtgtaaaaataatgtaatgatTTACGTTGGTGTGATTGGTCATTGTGGATGAATTGGACAAAATGTAACAATGTAaagttagcatgttgtttgcaAAAATTCAACTGCTTGGAGAGAATTATGGAACATCAGTAAGGGATATTGTTTTAAGTTAAGTGCCCACAGTATTGTTTTCAACAATACTGTGTGTTATAGGAATTGGGAACAATTCAATGTAACCGGAGCTGTTACactatttaaatattatgttttatattagcCTAAGTTAAGTACCCACAGTACTTTTTGCAATGATACTGTGTGCTATGGAAAGTTGGAACAATTCAATGTAAACAGAGCTGTCACAATATGTTTTTTACCATGCACTTCCTATCATAACTGAAGGATATTATTGGATCATGCATTTAAATGGTGATTGTTTAAATCCTTATGATAATCGAAGTTATGATATGTCTGGTTGTGATAAAACTGAAAAGGGAATGCTCTGTTTCCTGCAAACAGGACATTGCAATCAATGTTTGACTTCTGGAACTAGTGCatatgatttagctcaATTGCAATGGGAGATTTTAAGTCTACTGCTTAACTGGTTGTATCCAACCTATAATGGATTGGTTTAATACACATGTTTCTGCTACGTTAGAAAGATGTGCCTGAAGTATGTTCGAAGTTTGGTTCTTCGTTGAGCGAGGGACCGAGTgtaacaaattatatattttttgtttttcttctgttgcgCTCAACAAACAACCAAATGAACAGAGAAGGGTCTCATGACCTTAGGGTTAACTTCACACCTTTCTTCAAATTTCAGGAGGTAAAATATTGACACTTAAGCATGACCAAATAACCAGAGAAGGGTCTCCGGACCTTAAGGTTAACTTTCTCCAAATTTCAGGAGGTAGAATATTGACTCTAGATAATCATGCTGACAATACAAACCTCAAATTAGTGCTTTAcaatcagaaataatgtgcaaCTAGCTGAGAGAGGAGGTGGGCCTGATCAACTCACACTTCTCTCTTACCTATGAGGCCAACCTTTGGCTAGCACCCAAATATTGACTATAAAGATGAGGGTTTCTTGCTGAAACATTGGAAGCTCAGCCGTGGGATAAGCGCGCATCGCCCGGCATTCTCGGACATACGTGTTGGTTTTCCAATGTGACTGCAACGGGCTCCCCAGTCTTTGAAGAGGAAAATGATGGCACGTCTCTGAGGTTGTATATACTTGTATCAAATTGCTTGAAGTTTTCATTATCTGTCTTTTATTCATGTAATCTCATCTTTATTTCGCATTATAAGCCTTTTAtgcaattttgttgtattttgattaATGATGTTCATGAGTATGATTgatgattattgaatattattgtgataattgATATCAGCTGTGTGTACCAGCAATAAACAGTTGTATTGCTTGATTAGTATGGTGTATGGACCATTATTGGTGCCTTCTCTTGTCGATTAGCACCACACTTGTCTCACTTGCATAAACACATACCATACTAAAACCTTTTTGGTATGCTGAAACATTTTACATACTAAAATTTGGGGCATACTAAAAC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0042559 pteridine-containing compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0034312 diol biosynthetic process biological_process
GO:0046146 tetrahydrobiopterin metabolic process biological_process
GO:0003015 heart process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0005901 caveola cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003046 lncRNA upstream 524735 13997130 ~ 14083099 (+) True XLOC_000177
TCONS_00002818 lncRNA upstream 1125325 13481635 ~ 13482509 (+) False XLOC_000175
TCONS_00002817 lncRNA upstream 1125325 13481635 ~ 13482509 (+) True XLOC_000175
TCONS_00003045 lncRNA upstream 1125600 13479133 ~ 13482234 (+) False XLOC_000175
TCONS_00002816 lncRNA upstream 1126298 13478337 ~ 13481536 (+) False XLOC_000175
TCONS_00003047 lncRNA downstream 159621 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003048 lncRNA downstream 159727 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00003049 lncRNA downstream 241742 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00002820 lncRNA downstream 463520 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003050 lncRNA downstream 812346 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00000332 mRNA upstream 119760 14466860 ~ 14488074 (+) True XLOC_000189
TCONS_00000331 mRNA upstream 143814 14454663 ~ 14464020 (+) True XLOC_000188
TCONS_00000330 mRNA upstream 164932 14432434 ~ 14442902 (+) True XLOC_000187
TCONS_00000329 mRNA upstream 191399 14406098 ~ 14416435 (+) True XLOC_000186
TCONS_00000328 mRNA upstream 203279 14382584 ~ 14404555 (+) True XLOC_000185
TCONS_00000333 mRNA downstream 48921 14658801 ~ 14660280 (+) True XLOC_000191
TCONS_00000344 mRNA downstream 528021 15137901 ~ 15203357 (+) True XLOC_000205
TCONS_00000345 mRNA downstream 594753 15204633 ~ 15224338 (+) False XLOC_000206
TCONS_00000346 mRNA downstream 606779 15216659 ~ 15223551 (+) False XLOC_000206
TCONS_00000347 mRNA downstream 607108 15216988 ~ 15223551 (+) True XLOC_000206
TCONS_00000325 other upstream 270521 14337211 ~ 14337313 (+) True XLOC_000182
TCONS_00000318 other upstream 1604767 13002978 ~ 13003067 (+) True XLOC_000173
TCONS_00000315 other upstream 1754571 12848061 ~ 12853263 (+) False XLOC_000171
TCONS_00000316 other upstream 1754821 12848072 ~ 12853013 (+) True XLOC_000171
TCONS_00000309 other upstream 1871800 12735920 ~ 12736034 (+) True XLOC_000169
TCONS_00000334 other downstream 63897 14673777 ~ 14673871 (+) True XLOC_000192
TCONS_00000335 other downstream 84681 14694561 ~ 14694655 (+) True XLOC_000193
TCONS_00000336 other downstream 91856 14701736 ~ 14701830 (+) True XLOC_000194
TCONS_00000337 other downstream 98996 14708876 ~ 14708970 (+) True XLOC_000195
TCONS_00000338 other downstream 106136 14716016 ~ 14716110 (+) True XLOC_000196

Expression Profile

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