RNA id: TCONS_00000344


Basic Information

Item Value
RNA id TCONS_00000344
length 7522
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_000205
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 15137901 ~ 15203357 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGTTTCATCTGAACGGTTGAGTTACGTAGCGTAGTGTTGCAGTGAACGGAGGgggaagagagagggagaggttgAGACAGAGCgagtgagagggagagagagagagggagagactgCAGCATCATTTGAGGGACGTTCACATGCAGTGCAGTAGAACGTGCAGGTGAGGGGAGGAGGAGAATGCGGGACTTTTTCCTCAAACACTTCACACACATCCACCACGGACTCCGGAGGAATAACTAAAGGCTTTTGTTGCTACTTTATCCTGCTCTCCATCTTTCCATAAGTGGCTAATTTGCGTGCTCTGGGAAGTCGAACTGAAAAGCTTTTCTCTTTGTCAAGTTCACCGTAAAGGAATCTATAAGAGCTTGGCACGCGCGCGTAAGACTGCGGGGAAAGCTTTCCAATTTCCCTCGCGCTGGGTTTTAAGGTAAGAGAATATACCATATCggaaaaaaagactttaaaaagcACTTTGGCTTATTCCCAGCCAGTAGCGCAAGCTCTGGGATGCGAATGTGAGAGCTGAATTCACAGACAGATCTCTTTTGTGTTCTACTGCATTGCAGTTTAAAACAGTGAAAGCGCGAGAGGAGCCTGCGCTCCGCAGCATCTCAATGAGCCGGACAAAGTCGTTTAAACTGCTCAGATTTGACTCTCGTTTACTCCTAAATGGCACAGTGGATCATTATTGTCCGTAAAAGAGCTGTAAAGACTTATCGCCGATGCTGAGCTCTGCACAAagtggatgttttattttatcgTGTTGAAAACGTGACCGGAGAACTGAAAGACTGTGGGACAAAATAAGATTTTGCCGAAGGAAGCCTTCATAAAAATTAATCAGTGGCGATTCTTTCTTGGACCAGAGGAAGCTGCAGAtagagagtgaaagagagagaggaagagagcgagagagaaagagagagagagagagtcatggGGAGCAGGAGCGTTGGCGCAGTGCACTCCGCGCGCTGCTACCTCGTGCTTATCCTGCAGCTGCTGACTCAGCTCCCGCACGCCGATTCAGCGCTGCGCTACCGCGTGGCGGAAGAGGGGCCGGCCGATGTGCACATTGGTAACGTGGCTTCAGACCTGGGGCTGTCCACCTCTGGGATTGGGACTGGTGATGTCACATTCGCTTTGGAATCTGGCTCTGAATTCTTCAAAATTGACAATGTCACCGGAGAGCTTACTACAGGCAGCAGGAGGATTGACAGAGAGAAGCTGCCACAGTGTCAGATGATTTTTGATGAGAATGAGTGCTTTTTAAACTTTGAGGTGTCAGTCATAGGTCCCCTGCAGAGTTGGGTGGATCTCTTTGATGGCCGAATTGTAGTCACAGACATCAATGACAACACACCCTCTTTCCCTTCACCAGTACTCACACTATCTGTTGAGGAGAATCGTCCAATCGGCACTCTCTATCTTCTTCCCACCGCCACAGACCGCGATTTTGGTCGCAATGGCATAGACCGCTATGAGCTTATCCAAGACAGTAGAGATGGAGGCTCATCATCCCGGCGACCCGCAAATGGTCCAACAAATGGAAACGGTGGTGACAGAAGGAGAGGGCCAGAAACAGGGACAGGGCCTGCCAGCAggagcagtgtgtttgagctgcaGGTGGCTGACACACCTGAAGGACAGAAACAGCCTCAGTTGATTGTGAAAGGGCCTCTGGATCGTGAAGCAAGGGATTCTTATGAACTTGTGCTGCGCGTTCGTGATGGCGGCAACCCGCCTCGTTCCTCACAAGCATTGTTACGTGTGTCTATCACAGATGTTAACGACAACAGTCCACGCTTTGAGAGAGCAGTGTATGAAGCAGAAATGGCAGAAAACGCCCCACCTGGCACACCTGTCCTGCAGGTGCGTGCCACAGACCGCGACGTTGGTGTCAATGGGCAGGTTGAGTATGTTTTCGGAGCAGCAACCGAATCAGTGCGGCGCCTCCTGAGGCTGGATGAAGCTTCAGGTTGGCTGAGTGTTCTGCATCGTATAGACCGTGAGGAAGTTTCACAGTTACGTTTTACAATCACAGCCCGTGACCGCGGGCAACCACCTCGTACTGACCGCACTACAGTCGTTCTTAACGTAAGGGATGAAAATGACAATGTACCCATAGTTGAAATTCGAAAAATTGGACGAATCCTCGTTCGGGACGGTGCTGCAATGGTTCCAGAGAATGTACTGGTTGACACACCGGTAGCCCTAGTGCAGGTGTCAGACCGTGATCAGGGAGAGAATGGTGCGGTGACCTGCACTGTGGTTGGGGATGTTCCATTCACACTGAAACCAGCGGGTGAGACAGCACTAGCGCCTCCACCTGCCACAGATGATGCTTTCGAacgaaataaaaagaaatattttctcCACACCTCAGCGCTTTTGGATTATGAAGCTACTCGAGAATATAGTGTTACTATTGTGGCAGTGGACTCAGGTAGCCCGAGCCTTTCTAGTAACAGTTCCCTTCTAGTGCGTGTGGTAGACATAAACGACCATGCTCCCACTTTCGCCCAAAGCTTAGTGGAAGTGCATTTTGCAGAAAATAATGCCCCGGGAGAGCGAGTGGTCACTGTAGTGGCTGCTGATGCAGACAGTGGCAAGAATGCAGAGATTGCATACTCACTCGACCCATCAGTTAATGGAGCTTTTTACATCGATGCCGATAACGGTGATATTCGTGCCACTGGGGCATTAGATAGGGAGCTGAGGGAACGCTATGAATTTCGTGTGATAGCTCGAGATAAGGGGACACCATCTCTGCAGGGCTCTGCTACTGTTGTAGTCCAGGTCACGGACAGGAACGACAATGCCCCCAAATTTGTCCAGGAAGTCTTCACATTCTATGTCAAAGAGAACCTGCTTACCAATAGCCCTGTAGGCATGGTGACTGTTACCGATGCAGATGAAGGAGAGAATGCAGAGTTGAGTCTTTTCGTGGAGCATGATGAAGAGGAGGGTGGAGAGGAGGGCAAAGAAGGGAAGCAAGAAGTTTTCTCAATTGAAAACAACACTGGAACCATTTTCTCCTCTGCATCCTTTGACCGCGAACGACGTAGCACATATTCATTCCGTGTGCGTGCTGTCGATGGTGGAGAACCGCCACGGTCTGCCACCGCCACCGTCTCCCTGTTTGTCActgatgaaaatgacaatgcGCCATCCATCACATCACCCGCTAATGAATCATACACCCTTCTGCCACCCGCTAGTGGGGCCCGGACTGTGGTCCGCACAGTCTCAGCCTCGGATGGAGACACAGGGTCTAATGCTGACCTGCGCTATGCTCTGGTAGGCGGAAACCCTTTTCGCCTGTTTGAGATTGGCTCCAGTAGTGGGGTCATAACCTTGGCAGAGCCCCTGGAGAGAAGACACAGGGGTCTGCACCGCTTGGTGGTCCGGGTCAATGACAGCGGCATGCCTTCCCTTTGTGCCACAGCACTCGTGCATGTCTTCATCAATGAGAGCTTGGCCAATGCTACGCTAGTGGATGCACAGgTGGCCCGCAGCCTTGCAATCCCCCTCTATATGGATATTGCAGGTGACCCAGACAGCGAGAGAGCTCTTGGTAAACAACGCCTGAGCGTTGCCATCGGTGTCTTGGCTGGTGCTGCTGCCGTTATTCTGGTGATCCTTCTGGTTGTGACAGCTCGACAGTGTGGGGCGCAGGGTAAGAACGGCTATGAGGCTGGCAAGAAGGAGCCAGAAGAGGACTTTTTCGGTCCACAGCCTCCCCCTCtacaagcccagggctcccaaaATGAGCGTGGGCGCAAACCACGCAGAGACAAGCGTAATAATGGCACTGCCAAATCTGAGCGTTCTTTATACAGTGGAATTATGACGGTGAACGGCTGCAGACGTGGGGGAGGTGATGAAGAAGAGGAGGATGAGGAGAGCAGCAGTGCCAGTGAGAGGATTGCTGCCCGTTATTGCGCAGCAGCTAATGGAGACCCTAGTAGTCCAAGACTAGGCTCAAGGCGCCACCAGTCAAGCCCAGATCTGGCCCGCCACTACAAGTCCAGCTCACCCTTGCCTGCAGTGCATCTTCAGCCCAACTCACCACCCGTGGAAGGCAAGAAGCACCAGGCTGTGCAGGAACTGCCCCCCACTAACACCTTCACTGGCAATGGCACCGGTAACGCAGATGCTATGTCACTCAGCTCAGACCAGTGCTCCGATTACGGCTGTCAAACCATCAAGTACAGCAAACAGCCCCTCAGAAGAGTGACATTTTCTGTGGTGAGTCAGGCTCCTGATCAAGGCTGCTATGATAGTGGGGTGGAGGACTCAGAGACCCCCAGCAGCAAGAGCTCCTCTGGACCCAGACTGGGATCTTTACCGCTGCCTGAGGACGGATATGAAAGAACCACACCAGAAGGGAGCGTAGGCGAGGAGGAGCATGTGGAAAATGACTCCAGGCAGCTTCCTGACGTGGCTCTGACAGGAAAATGCACACACGAATGCAACGAGTACGGTCACTCTGACACCTGCTGGATGCCCGTGCAATCCTCACCACGACGACGCATCGAACCACCCCAACTTTCCACCTTCGCCTCACCCGgcgataacaacaacaacaccgaAGACAACAGCGACCGAGAGGAAGATGGAGATGGAGGAACGGATAAAAGCAGCGGAGGTAGCGACGAGGTGCGGGATTCGCTAGCAAACGGAGATCCACTGGGAACACTCAGCCGCCGGGATCGGAACAGGAACATGGGTGACCATAACCGCAACCTCCTAAACCGTAAAATGACCTCCGCATCCTACGATACATTCAGCAGCGCCGGATTCGGCCGTCGTCCCGATGAAGAAGACTCGCATCCCCCAGAGGTCATACCGCTCACGAGGACGGGGGCTGATTATAAGACCACCTCGTGCCTCACTCTGTCCCGCAGAGAAGTGTACCTGTGATCTGCAGCCATGTTCCCGAGCTACTTCACTGCATCGGAGCAGGAGGGTCATTTTTAAGAGACTAGCGCATATACCTGTTCAAAACAGGCGTCTTCTCCTTGCCAAAAATTCATCATCGGTTCATTTCTATGGATGCAAAAGATCAAAGTTGAGGAGAAAAGTGAATCATCTTTCATAAACTTTGATGGACTTCATTAAATGGCAAACACTTGCATGTTCGGCCTGTCCGCAGACAGGGGGGATGATTGGGGACTGATGGACAAAGATCACATAAACGGATGCTCATTTTACCTGACTGTGGCACATTATGGAAATAAAACCACCACGTagcatcaggaaaaaaaaatatggcaacttaatattttaatctaACTAGTTTCCTGTTGCTGAGCCGGTACAGTTATTTAATTGCAGTCACATGGTAACCATTAGACATGTAAATGCTTTCATTGCAGACTttcaaaagaagaagaagaaaaaaatccagTCATCCATTTATATCATTTGTAAATCTGCTTGTTTTTCTGTTAACACCAATATGGGAATATACTACAACTCTCAGTAGTGCTTCAAAACTTTCAGATGGAAATCTTTGCTATTTCATCGCTCCTGTAATGGGGCAATTTTCACAATGACTGTTATATCACCATCCCATCAGACCTCAGAGTTAAAATCAGCCAACTCAATCATGCGACACATACTCTGTACACAGCACAAACACATAAAGACACGCCGAGATACATGTCTATATCCATTTAGTGCAGACGTgtgtgtacaagtgtgtatgTACTGTAAAAAAGACAGACGTTTTGGCATACCTGAGGCTTTTTTTAAGACGCGGTTTTTCGAAAGTAGATGTAGCATTTTTGCCTGCTTGATCTTCAACTAGTATATAAGACACTGACGTGTATTTGAATAACTAATCATCTGTGTAAACTGCATACACAGGGGCATTAAACAATGTTTAGATACATCTATATTATACTATAAATGACAGCTATACTGTATCTCATCCCTTTTAAGTAGAGCTCATATGTAAACCAAATTTCTTTCAAAGCAACACTGCATGAGGATAAGCTAAtgcttattttgttaaataagaaTCCGATTTTGTTGTTTTTCGGAGGATGTAACCTCTTTAGAAGGAGCGTGTGTGTGAACAAGAAGCGAGGTCGGTGTGCAAATGAAGAGCTGGATCTTTACTTTAGCCAGAtatgacacacacgcacactctctACTGTACTGTAGTTGTTCAAATTACACTTCAAACAAATCAAGGCGTTTTAATGAATCTTATGGCAGCCTCGACCTGGTCGTCGCCATCTCATCAAGAAATTTCaaattgagtttattttttaGCTCTTGATATGCATTGTAAGTACAATCTGACTGATAAGAACAAACTGACATGTATTTCACCTACTCTCAGGAAACTTGAGATTCAGTGTGTGTCCTCGGCCCATTATCAGTGTGAGCTTTAGTCTGCGCTCCGATTTGCCCTCACAAGGCCATACTCTGGGGAGCCTCTTTTCCCACCCTTTCCCCTTTTCCAGACACACTGCACCTGGCGACGGTGTCCGaaagtgtgtgtgcgtttgtttgtgtgagtgtgtttccaGGCTTCCCGCATGGTGAGACTCGCAGACTCATCCCTTTCACTTCACGGAACAGCCTTGGGTCTGGAGCGGGACTGGTGGACTCCAGTCCATCTATGCCAAAATCTTGTCCAGCGTTTTTCGGTTTTACCGAAAGTACTGGTGCACAAACTTACCTGAAAAAGACTAGCCCAGAACCTGCAGTTCAGTGCCTGGATGAGAGGAAATCATTGAACTGGCCTATACAGGGTTTGTGAAACCAGAGGACTCGAGACGAAGAAGAAGGAATCTGTCTCTAAAGATGGCGCGTTTCCTTTGCCAGGTTTATAGGCTAAATATGCTGTTATACAGCAGGCTGTAATTAGTGTACAATATGGGGTGCATAACGGACTATGTATATGAAAAACCgtgtgttttcttctttttttactgcACGTTTACCTAACAATTCAACTCACTTACTGCAAAACGGGGAGGGACGGGGAGGGCAAAATAACATTGTGTCTAAAGCGTAACATTCACTTGAACTTTTTTATGAGATAAAAAACACTGAACTCATGTACTCGCCCAACATCCGCCATTTTACTGCTACCCTGTAGAAATGACCACTGAACTTTAACCTGAAAGGCATGTTGACGGTCTTTAATCCTGCACCTGtgaggaaaatgttttttttttttctttttttatgctgTGTGAAAGAGGAGCTTTTGAAGCTCTGTCTTTCTCATATGGATTTTATGCGTTCATTGCATTTGTTATGacaaataacaaatcaaaagggGTTGGAATGGTTTGAAAGTTTGGTATGTGACATGTAAAAGTTTGATTTTGACATTAAACACCTTTAAACCGTGCTCTGCTTCATTTGTCGCTCTTTAACTTGCTGCTTGGCTCAATTTTGCGCATGTTTTGATTGCATGCTAATGAAAATACAATTCTTTTGCAATTCTGCACCCTGCTGGTAAAAGAGGAAATTGCATTCCtgagaaacaa

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120206-1 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PCDH7 (protocadherin 7).

Ensembl:

ensembl_id ENSDART00000111475

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002820 lncRNA upstream 64237 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 116479 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 367247 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003048 lncRNA upstream 367247 14769607 ~ 14770654 (+) True XLOC_000202
TCONS_00002819 lncRNA upstream 528021 14607834 ~ 14609880 (+) True XLOC_000190
TCONS_00003050 lncRNA downstream 218869 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00003051 lncRNA downstream 1370609 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 1468732 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 2705702 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 2762757 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000333 mRNA upstream 477621 14658801 ~ 14660280 (+) True XLOC_000191
TCONS_00000332 mRNA upstream 649827 14466860 ~ 14488074 (+) True XLOC_000189
TCONS_00000331 mRNA upstream 673881 14454663 ~ 14464020 (+) True XLOC_000188
TCONS_00000330 mRNA upstream 694999 14432434 ~ 14442902 (+) True XLOC_000187
TCONS_00000329 mRNA upstream 721466 14406098 ~ 14416435 (+) True XLOC_000186
TCONS_00000345 mRNA downstream 1276 15204633 ~ 15224338 (+) False XLOC_000206
TCONS_00000346 mRNA downstream 13302 15216659 ~ 15223551 (+) False XLOC_000206
TCONS_00000347 mRNA downstream 13631 15216988 ~ 15223551 (+) True XLOC_000206
TCONS_00000348 mRNA downstream 22911 15226268 ~ 15257315 (+) True XLOC_000207
TCONS_00000349 mRNA downstream 55284 15258641 ~ 15285455 (+) True XLOC_000208
TCONS_00000343 other upstream 370231 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 393162 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 400337 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000340 other upstream 407511 14730296 ~ 14730390 (+) True XLOC_000198
TCONS_00000339 other upstream 414651 14723156 ~ 14723250 (+) True XLOC_000197
TCONS_00000353 other downstream 958747 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000357 other downstream 1255168 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000364 other downstream 1397341 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 1565326 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 2310158 17513515 ~ 17522176 (+) True XLOC_000219

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU472166 True 4173 TUCP 0.52 2 CI01000300 4390320 ~ 4395121 (-)
tiger barb (Puntius tetrazona) TU247297 True 660 TUCP 0.40 4 NC_056723.1 6540514 ~ 6541900 (-)
mexican tetra (Astyanax mexicanus) TU247297 False 559 lncRNA 0.51 1 NC_035917.1 4514307 ~ 4514865 (-)