RNA id: TCONS_00003047


Basic Information

Item Value
RNA id TCONS_00003047
length 1038
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_000202
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 14769501 ~ 14770654 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATATTAGAAATATAAGTATAAGTTCaaaatagtttattattgtaaatattataaagtaaattaaatcgcTCACCAGTTCTTAGTCTACGCACCATTTCAGATCACATGACCGTACGTAGATATCATCTGGTACGGTACAGTCATATTTATGTACTTTTCGTTTgctcttgttttaataaaattattaatattaataaattgtattaatgGTTTCGATATTTTCGATGAATGTGAAGGTTTTCTAAGGGACTTTGTGTACTTTTAACGGCTAGAAAGCACAAAACAATTCACGCGCCGAGTTTTCgcgtctgaccacaagatggcgtccACAGCTGAAAAGGTGAAAATTTCTAAATACATTATTTCTCGTTTATGTGAAATACAAATATACAGCTTTCAATATGCTAAATTACTATCACCTAGTCTGTAATGAAAATTGGCTTGTACATGTTTGCTAGAATTTTCCTAACCAAtctagttttgtttgtttatgtgaaaaataaatacataacggATTCTTTTTTTAGCAAAACATCTCTCGTTTGTCATTACATTTGAAGATTCGATGTGATTTACGCTGTTGAACGTCTGTTACAGGTGCATAATGTGCATCGAAGCGACCTGATTTTACAcaatagtttactgtagtaaatataTGTCAAAGTGATGTTGCAGTTGCTGTGAAAAGCTAGGCGAGAACACAAACCACAAGTGTTTCCATTCAGGCATGCAACAAACTGAATGTCCTAAAAGTGTTTGTGGTCAAGCTGGTGATCTTGCATGCTCAATACACACATCAATGCATGAGATAAACTGtggttagacaaaaacaaaaagaagcaGAGTAAGAAAATATTTAGTGCACGCTGCAGCTGTAAATGTtgctttcattatatatatacttTCATAACTTAGAATTGTTGAGAAACTGAAGATGCAAAAGTgtctgatttattaaaatatgcaccATAAATCATGAACAGAATTAACAGCACACAACTGTGGTTTGATTTACTTAAAGAAGAGCAGAGCAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002819 lncRNA upstream 159621 14607834 ~ 14609880 (+) True XLOC_000190
TCONS_00003046 lncRNA upstream 686402 13997130 ~ 14083099 (+) True XLOC_000177
TCONS_00002818 lncRNA upstream 1286992 13481635 ~ 13482509 (+) False XLOC_000175
TCONS_00002817 lncRNA upstream 1286992 13481635 ~ 13482509 (+) True XLOC_000175
TCONS_00003045 lncRNA upstream 1287267 13479133 ~ 13482234 (+) False XLOC_000175
TCONS_00003049 lncRNA downstream 80968 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00002820 lncRNA downstream 302746 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003050 lncRNA downstream 651572 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00003051 lncRNA downstream 1803312 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 1901435 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000333 mRNA upstream 109221 14658801 ~ 14660280 (+) True XLOC_000191
TCONS_00000332 mRNA upstream 281427 14466860 ~ 14488074 (+) True XLOC_000189
TCONS_00000331 mRNA upstream 305481 14454663 ~ 14464020 (+) True XLOC_000188
TCONS_00000330 mRNA upstream 326599 14432434 ~ 14442902 (+) True XLOC_000187
TCONS_00000329 mRNA upstream 353066 14406098 ~ 14416435 (+) True XLOC_000186
TCONS_00000344 mRNA downstream 367247 15137901 ~ 15203357 (+) True XLOC_000205
TCONS_00000345 mRNA downstream 433979 15204633 ~ 15224338 (+) False XLOC_000206
TCONS_00000346 mRNA downstream 446005 15216659 ~ 15223551 (+) False XLOC_000206
TCONS_00000347 mRNA downstream 446334 15216988 ~ 15223551 (+) True XLOC_000206
TCONS_00000348 mRNA downstream 455614 15226268 ~ 15257315 (+) True XLOC_000207
TCONS_00000343 other upstream 1831 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 24762 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 31937 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000340 other upstream 39111 14730296 ~ 14730390 (+) True XLOC_000198
TCONS_00000339 other upstream 46251 14723156 ~ 14723250 (+) True XLOC_000197
TCONS_00000353 other downstream 1391450 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000357 other downstream 1687871 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000364 other downstream 1830044 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 1998029 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 2742861 17513515 ~ 17522176 (+) True XLOC_000219