RNA id: TCONS_00000377


Basic Information

Item Value
RNA id TCONS_00000377
length 539
RNA type processed_transcript
GC content 0.50
exon number 2
gene id XLOC_000224
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17858380 ~ 17861928 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCCTTTCCTCTTGGGTCAGTGGCTCTCGTACGGAGCTAGAGAGCTATTGAAAAAGCATTGCGGTAAAACTGTCTCTTTACACATGACGAAACGCTTCTCCGTGTCAGCTCCGGGAGGAGGAGGAGATGAAAACACGTTCGTTTTGCATACTCAATCCGACGCGACGATTGCGCGCGAGAAAGCGAGGATGAGCACGTCGAGAACGCGAAGGGCAAGTGTTTAATAGAGACTTCATCCAGACATCATCCAATCGTCGCTTGTTTCTCAGGGAAGAGGAGTACTTTATAGCACAGCCTATAGAGTGTGCGCGCTCATGTGTGAGATGGAGAGCAGCGCCGCGTATTGGTCCCTCGCAGGTTTTCAGTAGCCATGGCAACCAGTCAGAATACTTCAGTAATCAGTGCGCGGGCTCAGGGGAGATGCTCAGGTCACCTCTCTGGCATTCAAGGGCAAACATACCGCACTGaaaacttcaaaatatcttcaagtTTGATGAAaGGTCTAGCCATGGTCTGGTGAAATTCTGAAAGACAGTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135263

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003052 lncRNA upstream 1184254 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00003051 lncRNA upstream 1283451 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003050 lncRNA upstream 2422055 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 2784716 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 2836958 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00000380 lncRNA downstream 47131 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 104186 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 104186 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003053 lncRNA downstream 104983 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00002823 lncRNA downstream 107228 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00000376 mRNA upstream 159607 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000375 mRNA upstream 179291 17676745 ~ 17679089 (+) True XLOC_000222
TCONS_00000374 mRNA upstream 263335 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000372 mRNA upstream 322073 17527378 ~ 17536307 (+) False XLOC_000220
TCONS_00000373 mRNA upstream 326568 17527931 ~ 17531812 (+) True XLOC_000220
TCONS_00000378 mRNA downstream 31016 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000379 mRNA downstream 38378 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000381 mRNA downstream 372542 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 688936 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000383 mRNA downstream 949751 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000369 other upstream 336204 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 1089571 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1243791 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1399639 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 1696160 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000400 other downstream 1673192 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 1843771 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 1946523 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 1952937 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 2113663 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_06039087_06039798.mRNA True 1680 mRNA 0.36 2 CI01000300 6038932 ~ 6040870 (-)