RNA id: TCONS_00000358


Basic Information

Item Value
RNA id TCONS_00000358
length 2002
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_000214
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16463079 ~ 16480213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGATGACGCTAGCAGCGCTAAACAGCTGACGTCATGCTCACACGGGTTGTTTTCTTGCGAGCTCGTGTACTTCAGACAACAGCTTAATCTATCATACTGTCATTAAAACTCAGCGCATTTTAGCGTCTTTCACAGCACTTACTTTTAAGTTTCTTGTCCGCTAATTTAAGCGGGCGTTCGGTCGCTAATACTTCTCAAACACTACACAGGCTCGTGGCTAATGCTAATGGTGGCGTCGGGTATTTCTTGAATTTCTGTTTCATTTCGTCAGGCCTTTTCAAACTGACACCGCCGAAGGATTCAAGCGTTACTTAGCGTGTTGGCAGCCGAGAATGAACTGGATTTTCCCCTTGTCCAAGGGCTCTGGATCGATCCCTCCTCTGAACAGTTTACAGAAACAAAGACAGAGACAGATCGAGTCTCTCAAAGCTGCTCACTCCAATATTGCAGAAATCCAGAAGGATGTAGAGTACAGACTTCCTTTTACTGTCAACAATTCAACTATTACTGTCAATatCTTGCTCCCCCCACAGTTCCCTCAGGAGAAACCAGTGGTTAGTGTTTTTCCTCCAGTGGGTCATCATTTAGTAGACGGCAACAATGGAACAATGGTTACCAGCCCACTCATAGCTAATTTTGGAATGCATTCAGATTTAGGCAAAGTAATTCAGAGTTTGCTAGATGAGTTCTGGAAAAGTCCTCCGGCCTTGACGTCAGATCCCACCTTTCCTTATATGTACAAACCATCGGCAATGCCCCCTTACCCAACACAGAGCTTCCATTTTGTTCCTGCCTTCCAACCTCAGGATGGTCAGCGGCCGATTGGCCCAGCCCCTGTGCCACATGCAGGGATGGAGCCTCAACAAGCCCCTCCTAGACCAGCAGCACCAGCTTACGGACTCATCACAGACCTTCCACTTCCTGTACCAACTGCTGACTCACAGTCTGGCCTGAATGGACACATATACAAGATGCCTGATATCCCAGATACATTTTCAGAACTATCTGAGATGAGCGTTTCTCAGCTGAAGGACATGAGCGATCAGGACGATGTGCTGTTGGACTTCTTTATGTGTCTGCCTCAACTCAAACAAGTCACCTCAGACAAAGAGGAGCTGGTCAACAGCATCGTAGAGATGGCCAAGAAGAACTTGCAGCTTGAGCCACAGTTGGAGGGCAAGAGACAAGAGATGCTGTGTAAATATGAACAGTTAACCCAGATGAAGTCGGTATTTGAAACCAAAATGCAAAGACAACATGAGCTCAGTGAGAGCTGCAGTTTGAGTGCGTTGCAGGCCAGATTAAAGGTAGCAGCCCATCAGGCTGAAGAAGAATCTGAGGAGACTGCAGAGAACTTTCTGGAAGGAAAAACAGAGATCGACGACTTCCTAGCCAGCTTTATGGAAAAGAGAACGCTATGTCATAGCAGAAGAGCCAAAGAGGAGAAACTCCAGCAATGTATGAACACACACGGACAGTTTCCCGCCACACTTTAGATTTAATATCCCAAGAAGGTTTGGGATCAATCTACCAGCAGACCGGTGGGTTTGAGACAAGCAGCGCATCTTGGGGTTTACAGTCTGGATTGGGCAAATATAAAATGCACACGACACAGATTTTGGCACCATTCTATAATGAAATAACAATTATTTGTTTTGCACAGAATTCCTAAAAAGTGTTACGCTCACGCTGGTTAATTAGAACAGATGTGAGCACGGCCCACACTTGACTGTGAACCAAAGGCTGTAATCAGAAGAGGGCGATCTGTTCTTAATAGTGTTCAGAAGCAGAAACCGAGTTCTAAGCTTATTAGTTGTGACAAATGGGATTGGGCCTTGTAAGCACTTGAAGATGATTCTCAACAATGTTAATGCTGCCGTAAACGTGCGACaaaaaacatactgtatttaataatgttgataaaaaaagcctttattataatTAGACATtgtattatatgtttatttaatttgataggttaataaaacatttagaatAA

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0015031 protein transport biological_process
GO:0007626 locomotory behavior biological_process
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway biological_process
GO:0032509 endosome transport via multivesicular body sorting pathway biological_process
GO:0000813 ESCRT I complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8312 Acts upstream of or within locomotory behavior. Predicted to be located in late endosome membrane. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 53. Orthologous to human VPS37A (VPS37A subunit of ESCRT-I).

Ensembl:

ensembl_id ENSDART00000078675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003050 lncRNA upstream 1026754 15422226 ~ 15436325 (+) True XLOC_000209
TCONS_00002820 lncRNA upstream 1389415 15073400 ~ 15073664 (+) True XLOC_000204
TCONS_00003049 lncRNA upstream 1441657 14851622 ~ 15021422 (+) True XLOC_000203
TCONS_00003047 lncRNA upstream 1692425 14769501 ~ 14770654 (+) False XLOC_000202
TCONS_00003051 lncRNA downstream 93753 16573966 ~ 16574929 (+) False XLOC_000215
TCONS_00003052 lncRNA downstream 191876 16672089 ~ 16674126 (+) True XLOC_000217
TCONS_00000380 lncRNA downstream 1428846 17909059 ~ 17911739 (+) True XLOC_000226
TCONS_00002822 lncRNA downstream 1485901 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA downstream 1485901 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00000355 mRNA upstream 4822 16396870 ~ 16458257 (+) False XLOC_000212
TCONS_00000356 mRNA upstream 6578 16397063 ~ 16456501 (+) True XLOC_000212
TCONS_00000354 mRNA upstream 7158 16396870 ~ 16455921 (+) False XLOC_000212
TCONS_00000352 mRNA upstream 242844 16144615 ~ 16220235 (+) True XLOC_000210
TCONS_00000350 mRNA upstream 242845 16073887 ~ 16220234 (+) False XLOC_000210
TCONS_00000360 mRNA downstream 68520 16548733 ~ 16617741 (+) False XLOC_000215
TCONS_00000361 mRNA downstream 93769 16573982 ~ 16612144 (+) False XLOC_000215
TCONS_00000362 mRNA downstream 94099 16574312 ~ 16619858 (+) False XLOC_000215
TCONS_00000363 mRNA downstream 120477 16600690 ~ 16616888 (+) False XLOC_000215
TCONS_00000365 mRNA downstream 141132 16621345 ~ 16654161 (+) False XLOC_000216
TCONS_00000357 other upstream 4338 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000353 other upstream 300859 16162104 ~ 16162220 (+) True XLOC_000211
TCONS_00000343 other upstream 1695409 14767576 ~ 14767670 (+) True XLOC_000201
TCONS_00000342 other upstream 1718340 14744645 ~ 14744739 (+) True XLOC_000200
TCONS_00000341 other upstream 1725515 14737470 ~ 14737564 (+) True XLOC_000199
TCONS_00000364 other downstream 120485 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000367 other downstream 288470 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000369 other downstream 1033302 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000377 other downstream 1378167 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000400 other downstream 3054907 19535120 ~ 19539639 (+) False XLOC_000244

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_05217150_05224947.mRNA True 2625 mRNA 0.42 11 CI01000300 5216088 ~ 5225301 (+)