RNA id: TCONS_00000393


Basic Information

Item Value
RNA id TCONS_00000393
length 1969
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_000241
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19332837 ~ 19346048 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGGGCACTACAGCACAGCAGAAACATACAGAGTGAGTGAAAGAGTGGGTCAGAAAACAGAGAGCGGATGATATAAGGATGTGGAAGAGTGTGTGTTTAGTGCTAATGTGCGTGGTGGTGACGCGAGCTCAGTTTCCGCGTCAGTGTATGACACCAGAAGGTCTGCGGAGCGGCACCTGCTGCCCATCACCTACAGGACTGGCCAATGATGAGTGCGGCTCCATCTCTGGCAGAGGTCAGTGTGTGTCAATTACTGCTGACAGGCGCCCACACGGCCCTCAGTATCCTCACGACGGCCGGGACGACAGAGAGAGATGGCCGCTTCGCTTCTTCAACAGAACCTGCCAATGCAACGGAAACTTCACTGGGTTCAACTGTGGCCGATGCCGACATGGTCTGACCGGGCCGAACTGTGATCAGAGAATCACCGTGGtgCGCCGTAACATCATGCAGATGTCTGCCGATGAGAAAAGAGCCTTTGTGAATGCTCTGGACCAGGCTAAAAGAACTGTTCATCCTGACCTGGTCATTTGCACCCGCCGCTTTCAGGAGATTTTGAGCCCTGATGGAGCAAGTGTTCAAGTTGAGAACATCACCATCTATAATTACTTCGTCTGGACCCATTACTATTCGGTCAGCAAGACTTACATGGGTCCAGGCCAGCAGAGCTTCGGGGGTGTTGATTTCTCTCATGAAGGCCCAGGATTTGTCACTTGGCATCGGTACCACCTTCTGCAACTGGAGAGAGACATGCAGgacatGCTTGGCGACCCGTCGTTTGCCCTGCCGTACTGGAACTTTGCTATTGGAGGCAGCGAGTGTGATATTTGCACCGATGACCTGATAGGAGCCAGAAGCAGCTTCGACACCAACGGCATCAGCTCCAACTCTGTGTTCTCTCAGTGGAGAGTCATCTGTGAGAGTGTGGAGGAGTATGAGACACTGGGCACCATCTGCAACAACACAGAATCCAGTCCAATCAGGAGAAACCCTGCTGGTAACGTGGCCCGTCCAATGGTTCAAAGATTACCAGAACCACAGGATGTCATCGACTGTCTAGAGCTCAACACCTTCGACACACCACCGTATTACTCCACGTCCTCTCAGAGCTTCAGGAACACTATTGAGGGTTACAGCGCTCCCCAGGGTAACTATGACCCAGTAGTGAGGAGTCTGCACAACCTGGCTCATTTGTTTCTCAATGGCACAGGTGGTCAGACTCACCTGTCACCAAACGACCCCATCTTCGTCCTGCTCCACACGTTCACTGATGCCATCTTTGATGAATGGCTTCAGAGGCACACCGCTGCAGGGACACTGGCTTATCCTGAGGAAAACGCTCCTATTGGGCACAACAGAGAGTTCAACATGGTTCCCTTCTGGCCACCTATCAGAAACGCTGAAATGTTTGTCAGTGCCCCCGACAACCTGGGATACACCTATGAGGTTCAGTGGCCAACTCGGGCATACACTATTTCTGAGATCATCACTATCGCTATAGTTGCAGTGGTGCTGGTTGTAGCGGTGGTGGGTGGAGTGATTGGGTGTGCAGTCCGGGCTCGCTCCTACCGCTCGGCTGAAGGCCTGGAGCCGCTGCTTGGGGAACAGTTCAGGCGCTACTCAGAGGATGAGCGCCACGCTTCACAGTCTGTGGTGTGACTAAGCCACTGATACACTTCTTCAACCGATTTATTATTGCACTGCACATCCACACTGAATGATCAATTACTAGCATTCAAAAGCAATGTAAAAGGTTTGTGAACACGGGGGGCTTCTTTTATGGCTGTTTATTGTCTTTCATGTCCAGCGAGACATTGAGAATACAGCCATGTGAGtgagcttttaaaatatatttaatgtgtCGTCATGAGGTTATGCACTGCTTATGAATGCCCTATGAACACATGACAAAGTTATTGTACAGTGTGAGATATTTTATATTACTCTgatataaaaagttttaaattc

Function

GO:

id name namespace
GO:0097066 response to thyroid hormone biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0043473 pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0042470 melanosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-249 Predicted to enable oxidoreductase activity. Acts upstream of or within several processes, including melanosome organization; response to thyroid hormone; and retinal pigment epithelium development. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Is expressed in several structures, including eye; hatching gland; immature eye; melanoblast; and pigment cell. Human ortholog(s) of this gene implicated in oculocutaneous albinism; oculocutaneous albinism type III; and pigmentation disease. Orthologous to human TYRP1 (tyrosinase related protein 1).

Ensembl:

ensembl_id ENSDART00000078594

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003061 lncRNA upstream 67867 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00003060 lncRNA upstream 173552 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00000388 lncRNA upstream 333291 18965815 ~ 18999546 (+) True XLOC_000235
TCONS_00003058 lncRNA upstream 499394 18829450 ~ 18833443 (+) False XLOC_000233
TCONS_00000395 lncRNA downstream 86959 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00000397 lncRNA downstream 112932 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000398 lncRNA downstream 115877 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000412 lncRNA downstream 462393 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00002828 lncRNA downstream 677884 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00000392 mRNA upstream 1305 19303241 ~ 19331532 (+) True XLOC_000240
TCONS_00000391 mRNA upstream 219903 19094548 ~ 19112934 (+) True XLOC_000237
TCONS_00000389 mRNA upstream 240682 19083501 ~ 19092155 (+) False XLOC_000236
TCONS_00000390 mRNA upstream 242514 19083532 ~ 19090323 (+) True XLOC_000236
TCONS_00000387 mRNA upstream 266510 18965750 ~ 19066327 (+) False XLOC_000235
TCONS_00000394 mRNA downstream 86956 19433004 ~ 19466453 (+) False XLOC_000242
TCONS_00000396 mRNA downstream 88150 19434198 ~ 19466452 (+) False XLOC_000242
TCONS_00000399 mRNA downstream 169180 19515228 ~ 19517791 (+) True XLOC_000243
TCONS_00000401 mRNA downstream 189096 19535144 ~ 19537359 (+) False XLOC_000244
TCONS_00000402 mRNA downstream 192251 19538299 ~ 19561801 (+) True XLOC_000244
TCONS_00000377 other upstream 1470909 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 1810661 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 2564028 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 2718248 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 2874096 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 189072 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 359651 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 462403 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 468817 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 629543 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_06858460_06868025.mRNA True 2237 mRNA 0.46 7 CI01000300 6858423 ~ 6868644 (+)