RNA id: TCONS_00000411


Basic Information

Item Value
RNA id TCONS_00000411
length 2744
RNA type mRNA
GC content 0.52
exon number 19
gene id XLOC_000249
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19764995 ~ 19802602 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAAACGCGAAGCCCAGATTTTGTGTTGATGAAAAGCAAAGCAACAGCATGCCGACGTTGCTGCAAAAGCTCTTCAGCAAGAGAGCAGTCGGTAACGGTAACGGCAGCGCCCGGGACTGCTCGACGGGAGCGGAGCAGCGtTGGGCATCTGCTGAGTTTGATCTAGCTCAGATCAGGCTGATAGTGTATCAGGACTGCGAGAGAAGAGGACGACAGGTTCTGTTTGACTCTAAAGCAATACATAAACTGGACGCATCTGAGCCGACGGCTGATGAAACCAAAACTCCCCCTAACCGCAGTGGAGCTTGCCATATCGGCAGCCAAGCAAATGAGAAAGACAAGCCTCCTACATATCAGTATACCAGACCGGCTTCAGATGTGAACATGCTTGGAGAGATGATGTTTGGCTCTGTTTCCATGAGCTACAAAGGTTCAACTCTTAAAATTCACCACATTCGGTCTCCACCGCAACTGATGGTCAGTAAGGTTTTTTCCACCCGGTTCGGAAGCAGCAGCACCTCTGGAAGTACAAACACGCTTCAAGACAGTTTTGAGTCGATGAGCCAAACTTTTCCTAGTCACACCAGCAGCAGCATAGAACAACTCAAATCAACCGTCAGAGTACGCCATGTACCTAGCGCTCCTCTGCTCTCCCTGGTTCGGAGCGCATCTTTTTTTGCAGCCCACAGCAATCCGGTGGACATGCCGAGCAGAGGACACAGTGAGGACGGAGACAGTGGCATAGCTCGCTCGGCATCTCTGAGCAGTTTGCTGGCCACCCCGCAGCCTTCACCTGGCTCTTCCTTCAGCAGTGGCTGTGCCAGCAGCTACCAGCGCCGGTGGCTCCGCAGCCAGGCCACCAGTCTACAGCATGGCCCCATGCCCCGCTGGAACGCAGAGGAAATGTTCAACCTGTCTGACGAGAGCTGCAGCTCCAACCCTGccatgatccggaggaagaagattGCCATCAGCATCATCATCAGCCTGCCGGAGCGAGAAGAGGAAAATCACAACTTTCAGGAGTTTTTCTTCTCCCACTTTCCTCTTTTCGAGTCTCACATGAACAAACTCAAGACTGCCATCGAGAGGGCAATGATAGTGTGCAGAAGGATAGCAGAGTCCAGTCAGCGAGTGCAGGTCTATCTGTGCAGAGTGATGGAAGCTCTTGGAGAGTTCAGGATGACAGTGTGGAACCTGTACATGGCTCCCCGCATCAGCGAACCAGTCTGGCTGTCCATGATCTCCCAGAGTGCCGAGCGAAACCTACTGTGCCAGCGCTTCCTGAAGGAGATGAGTTTGCTGATGGAGCATGGAGTCAAGAGCCAGTTTCTGTCAGCTCTCCTTACTGCTGTTCTTACACATCATTTAGCCTGGGTGCCCACCGTCATGCCCAGCAACCTGCCACCAATCAAACCCGCCTGCCAGAAACCCACTTCCCAGACGGTGGATCTGCTGGCTAAATCTCACCCGTACAACCCGCTGTGGGCTCAGTTAGGTGACCTGTACGGAGCTTTGGGCTCTCCGGTGAGAGTGTGTCGAACGGTGGTCGTGGGCCGCAGAAGGGAGCTGGTACAGAGGGTCTTGTATATTCTCTCCTACTTCATTCGCTGCTCGGACCTGCAGGAACATGTGCAACCACAAGGACAAAAGGACAATCCAGCCAATCCCTGCACCTCTCCAACCACTGACCCCAACCCTGCCAGTGAGAGAATCTGCGAAAAAACATTTCCCCCTCCACCAGACACAATAAAGCCCATTCCAGGCACCTTTATGGAGCAAAATGACGAGACTGTTTCAGCAGATACACACTCAACCAATACACCCACTGGTCTAGAAGCGAGCATGGTCAGGCCTGAATGTACTGAAATGGGACCGGAATGTTTTGGAGAACACGTCGACTCTGTTGGAGGTGGATTAGAGCATATTTTGGCAAATCAGAGTCCTCTTCCACAAAGGGTGCAGTTTCACATTGGCAGCCCCAGAGAGGTGGAGAATGTGGGACAGGCTGGGGGTTTGATGTGTGGAGGGCAAGGGTTGGACAGGAAGTTGCATCAAAGGCTTTTGACGGACATAAGGAGGAACGAAAGTTCGGATAGTGCTCTAGGTGACAGTGATGATGAGGAAACATCATCGAGAGAAATGTACATGGCCGCTGAACAAACAGAGTACGAGTTACCACTACCAAGTTCTCAGGTGGAGAGTCGAGCCAGTGTCAATCATTTTGGCCGTTCTCTGCTGGGCGGCTACTGTCCTCAGTACATGCCCGACTTTGCCCTGCATGGCATCAGCTCAGATCTCAGGCTCAAACAGTGCCTCATGGCTGACCTGGAACACACTGTTCTTcatCCAGCACTGGATGAACCGGTGGCCGAGGCTCTTTGTATTGTGGCAGATACGGATCGACTGAGTGTTCAGGTGGTGACGAGTCAGAGGCGAATGTGTGAAGGCGGACGGTTGGGCAGAGACGTGATGGTGTCCAacctcatacacacactcatcacATCAGTTCTGCAGCTGTATGCACTCAACATCGCTGCTGATTTTtgtgTGATGCATTTGGAGGACCGCTTACAGGAGGTGTACTTTAAGAGTCGGTCCTTAGCAGAATATCTGAGAGGACAAACCAGGGTCCATGTAAAAGAGCTGGGGCTTGCACTGGGGATTGAGTCTAGTGACATTCCATTGCTTGCAGCAGTGGCCAGCACACATTCACCTTACGTGGCCCAGATCCTTCTTTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0051087 chaperone binding molecular_function
GO:0042030 ATPase inhibitor activity molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway

ZFIN:

id description
ZDB-GENE-090312-31 Predicted to enable ATPase inhibitor activity and chaperone binding activity. Predicted to be located in lysosomal membrane. Predicted to be active in cytoplasm. Orthologous to human FNIP2 (folliculin interacting protein 2).

Ensembl:

ensembl_id ENSDART00000138276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000398 lncRNA upstream 298775 19461925 ~ 19466220 (+) True XLOC_000242
TCONS_00000397 lncRNA upstream 302532 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000395 lncRNA upstream 327318 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00003061 lncRNA upstream 500025 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00003060 lncRNA upstream 605710 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00000412 lncRNA downstream 5839 19808441 ~ 19821195 (+) False XLOC_000250
TCONS_00002828 lncRNA downstream 221330 20023932 ~ 20027926 (+) True XLOC_000253
TCONS_00002829 lncRNA downstream 224287 20026889 ~ 20029066 (+) True XLOC_000254
TCONS_00003062 lncRNA downstream 343803 20146405 ~ 20147549 (+) True XLOC_000256
TCONS_00003063 lncRNA downstream 1134123 20936725 ~ 20938443 (+) True XLOC_000259
TCONS_00000410 mRNA upstream 8636 19708508 ~ 19756359 (+) True XLOC_000248
TCONS_00000409 mRNA upstream 8758 19708508 ~ 19756237 (+) False XLOC_000248
TCONS_00000407 mRNA upstream 99221 19649545 ~ 19665774 (+) True XLOC_000246
TCONS_00000405 mRNA upstream 132842 19602389 ~ 19632153 (+) False XLOC_000245
TCONS_00000404 mRNA upstream 132842 19602389 ~ 19632153 (+) False XLOC_000245
TCONS_00000415 mRNA downstream 46566 19849168 ~ 19886389 (+) False XLOC_000251
TCONS_00000416 mRNA downstream 52888 19855490 ~ 19886132 (+) True XLOC_000251
TCONS_00000417 mRNA downstream 127918 19930520 ~ 19989584 (+) False XLOC_000252
TCONS_00000418 mRNA downstream 130463 19933065 ~ 19989062 (+) False XLOC_000252
TCONS_00000419 mRNA downstream 141201 19943803 ~ 19950795 (+) False XLOC_000252
TCONS_00000408 other upstream 59163 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000400 other upstream 225356 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000377 other upstream 1903067 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 2242819 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 2996186 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000413 other downstream 5849 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 12263 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 172989 19975591 ~ 19980987 (+) True XLOC_000252
TCONS_00000430 other downstream 1451751 21254353 ~ 21254482 (+) True XLOC_000260
TCONS_00000435 other downstream 1761904 21564506 ~ 21566601 (+) True XLOC_000264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_07124043_07141507.mRNA True 2918 mRNA 0.47 16 CI01000300 7124043 ~ 7141844 (+)