RNA id: TCONS_00002825


Basic Information

Item Value
RNA id TCONS_00002825
length 2826
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id XLOC_000228
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18165117 ~ 18169100 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatattttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggCACTGCAGCTAAACAGTCACAACCTCACAGAGCTGCACAACTACCCCACTCAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGGTAAGTCatagttttattaatgtttttattttattgcaacactAAGTAGTCCATTATGTGGCCAATATGATATAAAGGGCCTAAAATGGGACTGACGTGattattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagctacattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtctgagttcctttcttcagttaaacacaaaaatttatattttaaagaaagatgaaaacctgcaaacattaacttccatagtattagttttttcctactatgtatgtcaatgtttttagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtgaactattcctttaacccaatctagttgactttactagaaaATTGTATAGAAACCCAGTGGCTTAAACCCATTACATTTTATACAAGGTACAACTTAACAGCcatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggatttaaggcaacatgtttctatgcagttttctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatatttttagggTGGAGCACAGTATGCTGTTGTAGTTTTCATATAATTGATGAGTCAAACATGagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgagaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaatacatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttagacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgtaattataaatataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgttTATTATGATGGCATTTCCAAAGCcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttatt

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0035270 endocrine system development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003053 lncRNA upstream 194833 17966911 ~ 17970284 (+) False XLOC_000227
TCONS_00002823 lncRNA upstream 194842 17969156 ~ 17970275 (+) False XLOC_000227
TCONS_00002824 lncRNA upstream 194842 17969604 ~ 17970275 (+) True XLOC_000227
TCONS_00002822 lncRNA upstream 196671 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00002821 lncRNA upstream 196671 17966114 ~ 17968446 (+) False XLOC_000227
TCONS_00003055 lncRNA downstream 186646 18355746 ~ 18363871 (+) True XLOC_000230
TCONS_00003056 lncRNA downstream 660072 18829172 ~ 18833443 (+) False XLOC_000233
TCONS_00003057 lncRNA downstream 660119 18829219 ~ 18831662 (+) False XLOC_000233
TCONS_00002827 lncRNA downstream 660247 18829347 ~ 18833443 (+) False XLOC_000233
TCONS_00003058 lncRNA downstream 660350 18829450 ~ 18833443 (+) False XLOC_000233
TCONS_00000379 mRNA upstream 252472 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000378 mRNA upstream 266890 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000376 mRNA upstream 466344 17695426 ~ 17698773 (+) True XLOC_000223
TCONS_00000375 mRNA upstream 486028 17676745 ~ 17679089 (+) True XLOC_000222
TCONS_00000374 mRNA upstream 570072 17593392 ~ 17595045 (+) True XLOC_000221
TCONS_00000381 mRNA downstream 65370 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000382 mRNA downstream 381764 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000383 mRNA downstream 642579 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000384 mRNA downstream 693960 18863060 ~ 18933671 (+) False XLOC_000234
TCONS_00000385 mRNA downstream 698406 18867506 ~ 18933072 (+) False XLOC_000234
TCONS_00000377 other upstream 303189 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 642941 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 1396308 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 1550528 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 1706376 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 1366020 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 1536599 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 1639351 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 1645765 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 1806491 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

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