RNA id: TCONS_00000385


Basic Information

Item Value
RNA id TCONS_00000385
length 1986
RNA type mRNA
GC content 0.57
exon number 13
gene id XLOC_000234
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18863060 ~ 18933671 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAATCGCTACTACTGGTCATTCAGCGTCTCGAGAGCCCCGTGTCTGTTCCCCGGACCCCGTTCCCAAGCGTGCTGATTTATGCGAGGACGCAGGGGCCCAGCCAGCGGAATACGGGGGTTTGGAGGGGGGCCACAGCCTGGGCAGCACTAGACTCTCTGGAGCACTTGAAAGCTCCTCTGCGGCGTCTTTTTCCCCTCCCACTTCCCCTTTCCtcctccaccaccaccaccatcatcatcatcatcaccccCATCCGGTAACTATGGAACCCCCAAGGACTCGATCTCGATCGCGGTCTGGATTTTACCATGGTGGATTATCTAACCCGAACGCTGGAGGAATAAACCACCATCACCTCCATCACCACCACCAACAGCAACAGCAATTTGGAGCTCATGGTCACACGGAAAACCTGCGCCCACCCGGGAGCATGCTTTCCCCAGGTGCCCACAGACACGCAGGGCCTGGAGTGCACAGGAACTCTGGAGCAGGTGCCATGGGAGGAGTTTACCACTATCATTCAGAGCATGCGTGCGCAGATGCCACTGACAAGACGGAGGATTCTCCGAGTCCGAAGAGACAGCGTCTTTCCCAGCAGTCAGTTCTGGAGTTTACCTCTGCGCCTCCATCCACACCCTCTCCACCCATCAGACCATGGGAGCTTCCGCCCAGTCGCAGGCCACACCCCTATCCACATCCACACTACCATCCCGAACGCTGCCACACACCTGCACGACACAGACGCAGTCCTCCAGTGCGGCGTCAGCGTGGCCGTCGAGACCGTCTGTCAAGGCACCATCCCCCTCACGGTTCACCAGGTGGGGGGCAGGATGAAAACTACCGCCACCCTCCTCACCCGCATTCTCTTCATCCCTACGGCCAGCCTCCATCCCACCCTCCACCCGGTCTTGATGAGCCCCGGGCCTTCCACCCCCCCACGCTCTCCCCACGACTACTCCACCCGCCGCAGCAGGGCGCCATGGTCATGGACCTCCACGAGCAGcTTCCTCAGGGTACGGTGCCAGTCTCGTATACAGTTTCTCCAGTACCGCCCCATGGTCTGCCTGCTCCTCTCTGTACGGGACAGCATCTCCCAGCATGCTCTTCCCAACAGCAGGTGCCTGCCTGTTCTGTGGTGTTCAGCGGACAGCAACACTATCCAATCTGCAGCGTACCGCCTCCGATGTTGCCGGCCTGCTCGGTGCAGCATTTGCCAGTGCCGTACGCATTCCCCTCTCTTCTATCCAGTGATCCACCCTTCCTGCTTCATCCTCCACATCTGTCGCCACACCTTCCTACTCCGGGACAGTTCTTACCCTTCCAAGCGCAACAGTCCCGATCTccATTGCAGAGGATAGAAAATGAAGTGGAGTTGTTGGGGGATCACCTGTCGGTAGGCGGAGGGTTTAACTATCCTCATTCAGGCCATCCTAGTCCTctgcccccttccaccccattGCAGTTCCTCTCCCATGAACCCCTGCACCAGGAGCTGTTTGGAATGCCGTATCCTCACTTCATGCCACGGCGAATCACAGGCAGACGCTACCGCTCTCAGCAGGCCGTACCGCCACCTCCTTACCACCCTAGTCTGCTGCCCTACTTCCTATCTGTTCTTCCAGTCCAGCCAACAGCAGTGGGTCCCGCCATTAGCCTAGAGCTGGATGTAGATGATGGAGAGGTTGAGAATTATGAGGCTCTGTTAAACCTGGCCGAGCGTCTTGGAGAAGCCAAGCCTAGAGGTTTGACAAAAGCCGATATCGAACAGCTGCCTTCCTACAGATTCAACCCCAGCAACCATCAGTCTGAGCAGACTTTGTGTGTAGTGTGCATGTGTGATTTCGAGTCTCGTCAGCTGTTGAGAGTACTGCCCTGTAATCACGAATTCCATGCCAAGTGTGTCGATAAATGGCTTAAGGCTAACAGAACCTGTCCTATTTGCCGAGCGGATGCATCTGAAGTCCAGCGGGATTCTGAGTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8693 Predicted to enable metal ion binding activity. Orthologous to human RNF38 (ring finger protein 38).

Ensembl:

ensembl_id ENSDART00000184180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003056 lncRNA upstream 34063 18829172 ~ 18833443 (+) False XLOC_000233
TCONS_00002827 lncRNA upstream 34063 18829347 ~ 18833443 (+) False XLOC_000233
TCONS_00003058 lncRNA upstream 34063 18829450 ~ 18833443 (+) False XLOC_000233
TCONS_00003057 lncRNA upstream 35844 18829219 ~ 18831662 (+) False XLOC_000233
TCONS_00003059 lncRNA upstream 35844 18829614 ~ 18831662 (+) True XLOC_000233
TCONS_00000388 lncRNA downstream 32743 18965815 ~ 18999546 (+) True XLOC_000235
TCONS_00003060 lncRNA downstream 180125 19113197 ~ 19159285 (+) True XLOC_000238
TCONS_00003061 lncRNA downstream 319955 19253027 ~ 19264970 (+) True XLOC_000239
TCONS_00000395 lncRNA downstream 499935 19433007 ~ 19437677 (+) False XLOC_000242
TCONS_00000397 lncRNA downstream 525908 19458980 ~ 19462463 (+) False XLOC_000242
TCONS_00000383 mRNA upstream 50700 18811679 ~ 18816806 (+) True XLOC_000232
TCONS_00000382 mRNA upstream 304185 18550864 ~ 18563321 (+) True XLOC_000231
TCONS_00000381 mRNA upstream 552361 18234470 ~ 18315145 (+) True XLOC_000229
TCONS_00000379 mRNA upstream 954861 17900306 ~ 17912645 (+) False XLOC_000226
TCONS_00000378 mRNA upstream 969279 17892944 ~ 17898227 (+) True XLOC_000225
TCONS_00000387 mRNA downstream 32678 18965750 ~ 19066327 (+) False XLOC_000235
TCONS_00000389 mRNA downstream 150429 19083501 ~ 19092155 (+) False XLOC_000236
TCONS_00000390 mRNA downstream 150460 19083532 ~ 19090323 (+) True XLOC_000236
TCONS_00000391 mRNA downstream 161476 19094548 ~ 19112934 (+) True XLOC_000237
TCONS_00000392 mRNA downstream 370169 19303241 ~ 19331532 (+) True XLOC_000240
TCONS_00000377 other upstream 1005578 17858380 ~ 17861928 (+) True XLOC_000224
TCONS_00000369 other upstream 1345330 17513515 ~ 17522176 (+) True XLOC_000219
TCONS_00000367 other upstream 2098697 16768683 ~ 16768809 (+) True XLOC_000218
TCONS_00000364 other upstream 2252917 16600698 ~ 16614589 (+) True XLOC_000215
TCONS_00000357 other upstream 2408765 16458525 ~ 16458741 (+) True XLOC_000213
TCONS_00000400 other downstream 602048 19535120 ~ 19539639 (+) False XLOC_000244
TCONS_00000408 other downstream 772627 19705699 ~ 19705832 (+) True XLOC_000247
TCONS_00000413 other downstream 875379 19808451 ~ 19815449 (+) False XLOC_000250
TCONS_00000414 other downstream 881793 19814865 ~ 19819096 (+) True XLOC_000250
TCONS_00000420 other downstream 1042519 19975591 ~ 19980987 (+) True XLOC_000252

Expression Profile

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