Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003056 |
| length | 2133 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 5 |
| gene id | XLOC_000233 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 18829172 ~ 18833443 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001704 | formation of primary germ layer | biological_process |
| GO:0048729 | tissue morphogenesis | biological_process |
| GO:0001706 | endoderm formation | biological_process |
| GO:0048731 | system development | biological_process |
| GO:0001707 | mesoderm formation | biological_process |
| GO:0001708 | cell fate specification | biological_process |
| GO:0045995 | regulation of embryonic development | biological_process |
| GO:0001711 | endodermal cell fate commitment | biological_process |
| GO:0001714 | endodermal cell fate specification | biological_process |
| GO:0007492 | endoderm development | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0002009 | morphogenesis of an epithelium | biological_process |
| GO:0010646 | regulation of cell communication | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0035295 | tube development | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0060429 | epithelium development | biological_process |
| GO:0090092 | regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | biological_process |
| GO:1903224 | regulation of endodermal cell differentiation | biological_process |
| GO:0010453 | regulation of cell fate commitment | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0048598 | embryonic morphogenesis | biological_process |
| GO:0010470 | regulation of gastrulation | biological_process |
| GO:0023051 | regulation of signaling | biological_process |
| GO:0009966 | regulation of signal transduction | biological_process |
| GO:0048332 | mesoderm morphogenesis | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0060795 | cell fate commitment involved in formation of primary germ layer | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0035987 | endodermal cell differentiation | biological_process |
| GO:0042659 | regulation of cell fate specification | biological_process |
| GO:0042663 | regulation of endodermal cell fate specification | biological_process |
| GO:0009790 | embryo development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003055 | lncRNA | upstream | 465301 | 18355746 ~ 18363871 (+) | True | XLOC_000230 |
| TCONS_00002826 | lncRNA | upstream | 660072 | 18165117 ~ 18169100 (+) | False | XLOC_000228 |
| TCONS_00002825 | lncRNA | upstream | 660072 | 18165117 ~ 18169100 (+) | False | XLOC_000228 |
| TCONS_00003054 | lncRNA | upstream | 660591 | 18166921 ~ 18168581 (+) | True | XLOC_000228 |
| TCONS_00003053 | lncRNA | upstream | 858888 | 17966911 ~ 17970284 (+) | False | XLOC_000227 |
| TCONS_00000388 | lncRNA | downstream | 132372 | 18965815 ~ 18999546 (+) | True | XLOC_000235 |
| TCONS_00003060 | lncRNA | downstream | 279754 | 19113197 ~ 19159285 (+) | True | XLOC_000238 |
| TCONS_00003061 | lncRNA | downstream | 419584 | 19253027 ~ 19264970 (+) | True | XLOC_000239 |
| TCONS_00000395 | lncRNA | downstream | 599564 | 19433007 ~ 19437677 (+) | False | XLOC_000242 |
| TCONS_00000397 | lncRNA | downstream | 625537 | 19458980 ~ 19462463 (+) | False | XLOC_000242 |
| TCONS_00000383 | mRNA | upstream | 12366 | 18811679 ~ 18816806 (+) | True | XLOC_000232 |
| TCONS_00000382 | mRNA | upstream | 265851 | 18550864 ~ 18563321 (+) | True | XLOC_000231 |
| TCONS_00000381 | mRNA | upstream | 514027 | 18234470 ~ 18315145 (+) | True | XLOC_000229 |
| TCONS_00000379 | mRNA | upstream | 916527 | 17900306 ~ 17912645 (+) | False | XLOC_000226 |
| TCONS_00000378 | mRNA | upstream | 930945 | 17892944 ~ 17898227 (+) | True | XLOC_000225 |
| TCONS_00000384 | mRNA | downstream | 29617 | 18863060 ~ 18933671 (+) | False | XLOC_000234 |
| TCONS_00000385 | mRNA | downstream | 34063 | 18867506 ~ 18933072 (+) | False | XLOC_000234 |
| TCONS_00000386 | mRNA | downstream | 86770 | 18920213 ~ 18933072 (+) | True | XLOC_000234 |
| TCONS_00000387 | mRNA | downstream | 132307 | 18965750 ~ 19066327 (+) | False | XLOC_000235 |
| TCONS_00000389 | mRNA | downstream | 250058 | 19083501 ~ 19092155 (+) | False | XLOC_000236 |
| TCONS_00000377 | other | upstream | 967244 | 17858380 ~ 17861928 (+) | True | XLOC_000224 |
| TCONS_00000369 | other | upstream | 1306996 | 17513515 ~ 17522176 (+) | True | XLOC_000219 |
| TCONS_00000367 | other | upstream | 2060363 | 16768683 ~ 16768809 (+) | True | XLOC_000218 |
| TCONS_00000364 | other | upstream | 2214583 | 16600698 ~ 16614589 (+) | True | XLOC_000215 |
| TCONS_00000357 | other | upstream | 2370431 | 16458525 ~ 16458741 (+) | True | XLOC_000213 |
| TCONS_00000400 | other | downstream | 701677 | 19535120 ~ 19539639 (+) | False | XLOC_000244 |
| TCONS_00000408 | other | downstream | 872256 | 19705699 ~ 19705832 (+) | True | XLOC_000247 |
| TCONS_00000413 | other | downstream | 975008 | 19808451 ~ 19815449 (+) | False | XLOC_000250 |
| TCONS_00000414 | other | downstream | 981422 | 19814865 ~ 19819096 (+) | True | XLOC_000250 |
| TCONS_00000420 | other | downstream | 1142148 | 19975591 ~ 19980987 (+) | True | XLOC_000252 |
