CI01000300_09025773_09045147 (RHOH, N4BP2)


Basic Information

Item Value
gene id CI01000300_09025773_09045147
gene name RHOH, N4BP2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 9024449 ~ 9045662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_09025773_09045147.mRNA
GTTTAAAAGCACCTCAGAGAGTAAAAGAGCTCTTTGAGCGGCTAATGGCCTAGCCGTCAGCTCCAGGCCTCAAACTATTCAACAAACATCCAGCCAACAGTCACATTTACCTTTTAAAATCACAACCCGCCGGTTCCTGTTACCCCAAAAGCATTTATCCCATATCTCTCACTCGACACTACTCCACTGCGGCCGTTATCCTAACTTTAGACGGTAGGAAATCTGAAATGTTTACTTGTTTTCTCTGTATAAGTTCACTCAGCGAGGCAAACAGCGACCACCAACTTCATCATGCCACACAAACTGTGTGAATTAAACTCCCTCGAGCGACCCCAGCCGCCTCACAACCGTTTACAAACAATTCCCCGGTCATTACCTCACAGACAAGTCGTTGTTTTAATTCATGAGTCAGGCTCGGGTACGGGTTTGGGTGTTTTTTTTAGTTTCGGGCACAAAGCTCCGTCTTTTTCATTCAGGGCTGTGTGAACGTCCTCGCGTGGAAAGTGGAGGCGCAGCGACCTCGTTGGCTGAAAGTCGGTATAGCAGGGCACCGGTGGAGGGAGAAACGTTACCGTATATATTAGAAAACAAACGCCTGAAATTGTGGTTTAGTCAAAGAACTTGGCACTGAACTTGGTTTACCGTAAATATTAGAAAAGTCTCTGAATGTGTACAGTACAACAGCACAACAGTACCTGTTTGCAATTACATTCACCCTACAAATTACATACAAAAATAACAGTGTACATTGAAGTGTGAGAATGTCAGAGTGAAAATGTATTTATTTTTAAATAATAATAATAGTACTCTTAAGACATGGGACACAACAGGTTACATTTGTTTATGGAACATAAACATATTTTTGGATAAATTTGTGAAAAATATTTAGAAGTGACCTATATTTATTTAAGGTTTGGTATAATCCCCTGCCTCTTATATTTATTCAACACATCTTGCACCTTTCTCATTCACATTCCCTTGCATAATTGTATTGTATAGAATATTTTGTACATACATATTTTGCTTATCTTGTTTATCTAGAAGCCTCACCAAGACTTGTGTTTAAACTGAGGCGTCGGAAAACACTCAATACTCAATGCTTGTGTAGGCGTACTTGGCAGTATATCTCAGATTCTTCCATGTAGTTTTACCTCTCAAGAGGTCAAAAGTTGGTGTGATGCTGTTTCCATCCACTGGGGGCGCTGCAGTATTTTTGCGTCTCCTTTGAGAGTTGTTCGTCTGGTTTTCTTTTACTTTCCTTCCTCTAGAAAAACTTGTAAACAGTGGATTTGTCGTCGGTGTCTTGTAAAAGGGGCACAACAGAATGCCAAAGAAAAAGAAAAACGGACTGAGTCCCTCCCGAGCCCCGATGCAGGCGGCTGAGTACGGGAGCGGTTCCGAGAGTCGAGCACACGGAGCAAATGGATCTTTTGTGACCCGGGCGGACTCATCATATAATAACTTTGGGTCCGTGCAGTCCAGGAGTGGTCAGTTGGAATCTCAAAGGCGAGACGAAATCATCCAGAGCATGCAGGAGATGTTTTCACATCTGGATCCAGAAGTCATTTACATGGTACTCTCAGAAGCAGATTTTAAAGGGTTTGAGCAAGCTGCTGCTCTCCTGGGTACTAACACCACTCAGACAGACCTCCTCAGTGGAACGGCAGAGAGCTTTGCCTTTTCAAACCAGCCTGCATCTCAGCCGGAGCTCAGTCCTGGTGAAACACACCTGACAGAAGAGTTTGATGCCCTCATTGATCAGGAACTTGAGACTTTGTCGTCACAGCAGACACAAGCTAGCTCCCATCCTTCAATGTCCTCCATACCTCTCTCTTCTCTACCCCCTCCTTCTCAATCAATCCCTCGCTCCTTGCTGCCTCTTACATCCCAGACTCAGCTTCCATCTCCTCAGACCTTACCAGAGCATTTTGAGCAGGCCTCTAACTCTGACCCCAGGCTCAATGAGGCCCGTGGCGGTACTTCACCTGTGAGTGAATTAAGTTTCGGTGGGGTCCATATCCCAGAGACGAAAACCATATCTCTTGACTTCAGTCACCTAACAGTGGAGGCCAGTTCTACTGAACCACGACCCTCTGCCTTTCAGGTTTACCGTAGACCTGACCAACTCTGTAACCACACAGCGGCAATGCGGCGTCAAGAAACACTCAGCACACCTGCCATGTTCTGGAACACTCAGGCTGCTGAGTTTCATCCCCGCGCTATGGGACCATCCTTCATTACACCTGTCATTCCTAACCCCACCCCTTGGAGCACTAACCCCATTACTGCTGCTCAGTGGTTGGCTCAAGGACCTATCAGACAAGCACCTCTGAAGCCTTCTGCAACTGTACCGAAGTCATGGACTCTACCCGCTAGAAACAGACTCAAATTGGAAGGGCAGGTGTTGGTGTTACTTAGAGGGGCTCCTGGATCAGGCAAAACCACCCTTGCCAATGCTATGTTGGCACAGAATCCTAGAGGGGTTGTATTGAGCACTGATGAGTATTTCACTCGAAATGGAGAGTACCAATTTGAACCAAATTTACTAGGAGAGGCCCATGAGTGGAATCACCAGAGAGCAAAAGATGCTTTTGAAAAAGACCAGTCACCCATCATAATAGACAACACCAATATGCAATGTTGGGAGATGAAACCATACGTTGCCATGGCACTGAAACATGGGTATAAGGTGCTGTTTCGTGAGCCAGATACCTGGTGGAAAACTAAACCTAGAGAGCTGGAGAAGCGCACAAGGCACCAAGTAACAAAGGATAAGATCCGACGCATATTAGAACGGTATGACCGATTTGTCTCTGTCCAGAGCATCATGAATTCACAAAGACCAGAACCAGTGCCAAGTGTTGTGGATTTGACCCAAACAGAGACTGAGCAAACACAACAATCTTTACCCCCTGGCCTCAGTCATCCTGATCTTGTTGGTGACTCTGGGTTGAGCAAACTGAACACACATCTTTCCTCATCTCTGCCCGATGTGTCCTCTGTTAGGCAGACTTGCAGTATCATTTCTGCAGGTGAGGAAGAAGGTGAAATAGTCTCCTACAGTTCCAAGGAGTCTATATTTTTGCATGAGAACATTCTGGAAGGGTCTGGAACACCTCAGTCTGATCTGATTGATGCTGAAGGGTTAGATTTGGAGCTAGATCTTCTGGACACAGAAAAAAACTTGGGAAATTTGAGTAGCGGGAAAACTGAAGAATTAGTTGAGTCAGCACACGAGAAGTTTTCGGAGCTGCCTGTGGCATTTTCAGAGTCCATTGCTCAGCGTGTCAGGAGGGACAGAGTGAATTGTAGACATGCCCTTGGAACAAGTGAACCTGCGAACTTTGACCCCAGCGTTGACTCTCCAGGGCAAGATAAGGAGGGAGGATGTGAAGGTGAGTCTCCTTCTGAGGACAAAGTAGTGAGGCCAGAGCTGTTGGATTTTGTGGGGGACTGGCCACTGGAATCTCAAGGTCAACGTCAGGGAAGACGTCAGAATTTAATGGATAAAACTGTTAAGAACACTGTTTTGGAATCCAGTGTTGTTGAACACAAAGATAACACTTCTTCCGATGAAGAGAAGCATTCTGACACTGACAAGCAGAATGCAGTTGAATTTCAAAAACTTGTAGATCTTCTGCAAGGTGGAAGAAACTCTCCAGGTTTTTACCAAGATCCAACTCCAACTAAACTGACTACTCTACATTCCCCTTCCTTCTATGAAAAACAGGGTAACTTGAACCTAGATAATGTGATTTGCCCTGAACTCCCTGACTGTGTGCTGGGAAGGATGTTCTCTGAGTGCACTGACCCAAGAAAGGATTACTCTGATTCACCAAGTACATCAAAACAGAGAGTAGACCCAGTTGAGCAGTTTAGTAAAGAGTCTGCTGAGAAGAGCACACAGGAGGAGGCTGAGCAAGAGGACAATGTAGCATCAGAGGAGAAATGCAGAATCAGCCCAAATGTCCAAGATACTCTGTGTTCAAAGGTTGCCATAGACTCAGAGAGCAGTCTGGAGAGACGGAGAGGTCTTAGCCGAAGAGTGGGGAAATCTTGTAAATTGGCACTTACCTTCACCAATCAAAACCCTTCGTCACCCTGCTCACAGTCTCCAGTTATTTTGCATCTGCCCTCTGATCTTCCACCTACGGGGGAAACACCTTCATTGCCCATGGTGTCATGTCCCAGTGCCTCAGCCCAAACAAACCCTCAGGACTTTGCTTTGCTTTGGCGAATTGACCAGCTGAAATGTTCTGAATTATCTTTGGACTTATCTAGTAGTAGTATGTTTGTTTTGGAGGGGAACTCTTTGCGTTTCACCCCAAAAACAAACGAAGAGGAGTCTGCCTACCAGCAGAGAGTGCCGTACCGTGTGGTCCATGAGAAAGGTTCTCAAGTGGAAGAGAATGACTTTAAAGAATCCCACTCTAAACAACAAAACCTTGAGATTCTGAGCCGCCATTTCAGACGCGTTTCCATTGATATTCTGGAGGACCTTTATGAGAAGTGCCATCAAGATATGGAGTGGACAACTAACTTGTTGCTAGATTCTGGAGAACAGCTGTATAAAGATGATGAGGATGACGAAGTTACCTTGGGGCCTTTGGTTCTTGAGAAAGAGTCATGTGAACCATCTATAGATCTGTCAAAAACTGTGATAGGCCCCAAAAGTGACCAGGCTAGAGCTGTGTGCTCTGATGACTCCAGCAACAGTTCAGCAAGTAGCATCAGTCCCAAGTCCCAAGAAACTAACCTTAGTGACGTTAGCCAAGCTGATGATGATTGGAGCCCAGGTCAGAGTTCACAAAGTGAAGCTGAAGGATCTGATGAAGCCAGCATGACAAAGGAGATATGTGAGCCTGAACCTTCCTTTGGATTATTAAAGCAGCTGACAGAAGACACTAAAGTACAACTGGAGGTTCCAGCAGCTAATGAACAACAGCCAGACAAAACAGGTCTGCAAGGTCCAGGGCAACAAGAGATATTAGTGACACAAAGTGAGCAAGTTGTTCAATGCCTGGAGGGAGCATTGAAGGAATGGCATGAAGAGGTGGGAGGAGAGAAATTAAAGGAGGATGAAGAGACAAAAGCAGAGGTGAATGCCATAACACAGTTACTACTGCATCAGGTTGACGAAATGGAGCGCAAAGAGAAAGAGGAGAGGAAGGAACTAGAAAACGAGAAAAAGAGAACTGGACAGGGGAGAAGAGAACCAAGTTCAATGGACATACAATCACTGGAGCTGAAACTTCCAACTGAACTTGCATTGCAGCTTACTGAACTTTTTGGACCTGTTGGGGTCAGTCCAGGTGCGTTTTCATCAGATGACTGTGCAGTGCAAATAGACCTGAACTTGGCCAAACTTCTGCACCAAAAATGGAAAGAGACTATTCAAGAGAAACACAGGCAGGCAGCTCTGTCCTATCAGCTAATGCACGAGAGTGAGACAGTCTATTCTCTCAGTACACACAAACACAAAGTGAATGTAGATGTACAGCATGTCATAACCAGTAGTTCCGTCCAATGGGGTGAATCGCAGGGAAACAAAACCAGGCTGAGGGACCAATTAGGTTTGCATGAAGAAATTCCTTTTATGGATCACTGGACTGCATCTTCTGCTCCTGTCTCACTGAGGGACATCATGATTGAAGAGCAGGTCATGCAAGACAGCATGGAGAAGTCCAGGTCAAGTCGGAGGGACCTGGATAAGAAAGATGGTGCAGCCAAGTTAAAGGAGAACCAGCTGTTTTCCACGTTTCCCACCATAGACCGACATTTCCTCAGGGATATCTTCAGAGATCACAATTACTGTCTGGAGCAGACTGAACAGTTTATGCATTCTTTGTTGGATGACGGGCCAGTCAAAAATGTAGTGGCTCCTGAACCTGCCCCTCAGCGCAGTGGTGCGCACAGAGCTTCAAGCAAAGAGCGGAGATGGAAACCGAAAGATGGGGAGGTGGAAGCAGCTCAATTCCAGGATTCGGAGGATCCGGAATATGAGGACTTCCGCACAGAGGCAACAGTGCAGAAACGTCAGCAAATAGAGTGTTTTAACAAGGCAGCTGAAGCCCATCGACAAGGACGCAAGGACGTGGCTAGTTTCTACGCACAACAGGGTCACATGCATGGAGAGAAGATGCGTGAAGCTAACCACCGAGCAGCCATGCAGATATTCCAGCGAGTGAACGCTTCACTCCTGCCTCAGAATATTCTAGATCTCCATGGACTGCATGTGGATGAGGCCCTTTATCATCTCAGTCATGTGCTCACTGAAAAGAATTTGGAATGCCGTCAGGGTTTGTGTCGGCCTCAGCTGTCAATCATCACGGGAAGAGGCAATCACAGCCAAGGGGGAGTGGCACGTATCAGACCTGCCGTACTAGACTACCTCAAAAACCAACACTACAGTTATACTGAGCCTAAGACCGGATTGGTGCTGACTGCACCTTACAATAACTACTACACCAGAGACAGAAGGATGAACGGGTTGGCAGAGACCTCAGTGAAATGCGTACTGGTTGGGGACTGTGCGGTGGGTAAAACTGCACTTCTTGTACGATTCACTTCTGAAACGTTCCCAGAAAGCTATAGACCCACTGTCTATGAAAACACTGGAGTTGATGTTTTCATGGATGGAATCCAGATTAGCTTGGGACTGTGGGATACAGCAGGACATGATACATTCCGCCAAATCCGCCCCATGTCCTATCAGCAAGCGGATGTGGTTTTGCTATGTTATTCGGTAGCAAATCCAAACTCGTTAAGCAATTTGCGGCAAAAATGGATCGCAGAAGTGAGGGAATTTCTTCCGAAGGTACCTGTGCTGGTTGTTGCCACACAGACAGACCATCGTGAGATGGGCCCGTATCGTGCCAACTGCACCACATCCTCAGAGGGCAAACAAGTGGCACAAGAGATCCGTGCCAAAGGATATCTGGAATGCTCGGCTCTCAGCAATCGAGGCGTGCAACAGGTTTTTGAGTGTGCTGTTCGAACGGCTGTTAATCGGGCAAGAAGACGGACAAGGCGGAGACTCCTTGACTTAAATCCCTGTAAAGTTTCCTGAATGCTTTTAAAACAGGGATGTTATTTAATTCTCATCACTAAGATAAAATTGTTTCTCACACACAAAACCAACTAACTGAAGCCTCAACAAAGACTTCTTAACACTGATTTTATAATACTTTCTACCTAAAAGACTATTTGATTTTGAGTCCTCTAGTCAGATTCTGAAAACTGACCATACATTAGACACATTACAGATATTGAACAGATATTTATTCGTTAAACAGCTGTGGACTTTTAATTTGATGAATTTTACAAGTTGAGTATATCATTTAAAAGACAGATATGTCTTTTATTGCACTGCTACTCCAAATGTACATTTGTAGATTGTAGTTGTCTTATTTTAAATTTCATTCTTTTATCTTTCTTTTTATGGTTTCTTGCAAAAGAAATGGAACCCTTAAAACTCGCTCTTTGTCTGCTGGTCCCTTCTCCTAGACCTGTGAAATAAGGAGTCACATTAGCTCATAATGCAACACTGAGATCACATTCTGTAATCTTAATTTTAGATGGCAA

Function

symbol description
rhoh Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human RHOH (ras homolog family member H).
n4bp2 Predicted to enable ubiquitin binding activity. Is expressed in axis; floor plate; and hypochord. Orthologous to human N4BP2 (NEDD4 binding protein 2).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_09025773_09045147.mRNA False 7584 mRNA 0.45 17 9024449 9045662

Neighbor

gene id symbol gene type direction distance location
CI01000300_08979290_08987162 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding upstream 35671 8978233 ~ 8988778 (+)
CI01000300_08949418_08957810 LIAS coding upstream 66592 8949321 ~ 8957857 (+)
CI01000300_08917691_08926730 NA coding upstream 96572 8917691 ~ 8927877 (+)
CI01000300_08874463_08915149 NA coding upstream 109228 8874463 ~ 8915221 (+)
CI01000300_08713685_08718935 GTF2E2 coding upstream 304713 8713685 ~ 8719736 (+)
CI01000300_09050912_09060586 CHRNA9 coding downstream 5250 9050912 ~ 9061185 (+)
CI01000300_09080472_09093223 NA coding downstream 34130 9079792 ~ 9093318 (+)
CI01000300_09136541_09152739 NCAPG coding downstream 90879 9136541 ~ 9153160 (+)
CI01000300_09282621_09306536 NA coding downstream 236246 9281908 ~ 9306766 (+)
CI01000300_09322462_09376575 SLIT2 coding downstream 276554 9322216 ~ 9377627 (+)
G413479 NA non-coding upstream 22308 9000094 ~ 9002141 (+)
G413523 NA non-coding upstream 46757 8977415 ~ 8977692 (+)
G413459 NA non-coding upstream 78795 8857687 ~ 8948603 (+)
G413437 NA non-coding upstream 239124 8783940 ~ 8785325 (+)
G413409 NA non-coding upstream 283129 8740906 ~ 8741320 (+)
G413549 NA non-coding downstream 33145 9078807 ~ 9079007 (+)
G413469 NA non-coding downstream 49413 9095075 ~ 9095781 (+)
G413577 NA non-coding downstream 118264 9163926 ~ 9178706 (+)
G413591 NA non-coding downstream 144165 9189827 ~ 9190302 (+)
G411777 NA other upstream 2554744 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 3132024 5891021 ~ 5892824 (+)
G410388 NA other upstream 4827894 4195646 ~ 4196555 (+)
G410382 NA other upstream 4900033 4123698 ~ 4124416 (+)
G414249 NA other downstream 1324249 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 1554274 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 1600529 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 2657822 11704476 ~ 11708351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location