XLOC_012552 (dtwd1)


Basic Information

Item Value
gene id XLOC_012552
gene name dtwd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5454341 ~ 5461423 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025137
ATGTCGGAGGATCCTCAGCCGGAGAGCAGCGCCCTGAGCGGCCTGAAAATCGCCTCGCACGCGCCGCTGGATGACGCGCAGCGAGCCGGCAGGATGAAGTGCACGCGCTGCGGATGCTCGCGCATGTTCTTCTGCTACAGCTGCGGCGCGCTGGTCGGACTGCAGCCCGGGGACGTGCCGCGGGTCACGCTGCCAGTGAAGATTGACATCATCAAACACCCGAATGAGACAGACGGGAAGAGCACCGCAGTTCAGGCCAAACTCCTGGCACCGCAGGACGTCACCATACACACCTACCCCTGCATCCCTGAGCTGGACCAGAGCGCAGAGAacATCGTGCTGGTGTTTCCTGGTCCGGATGCGATGTCGGTGGAGGAATTGTGGGAGTATTTCTGCGCTGACGGACGGCCGAGAGTGAAGAGAGTGAAGGCAGAAGCTGAGAGTCTGCGCTGCCCCATCCAGAGGGTGGTGTTCATCGACAGCACCTGGAACCAGACCAGCAGAATCATCACCGACGAGAGGctgcaggCTTTACCAAACGTGGAGCTGAAGAGCAGAAAAACCTGTTTCTGGCGGCGTCAGAAAGGAAGTCCGGACACGTATCTGGCTACGATCGAGGCCATTTACTACTTCCTGAAGGACCTGCACTGCCACTACTTCTGCGAGTACACGGGAGAATACGACAACCTGCTGTTCTTCTTCTCATTCCTGCACAAACTCATCAATAAAGCCAAACAGGCTGCTGGGAAAGCCTGAGAAAGACTCCACAGCGGCTGATGCGGCTgttatttcaacatttttatttacaagtCAATCGTGCATGCACATTTCCAGTGTGTGAGACAGTGACTGGCTTCTTGTTTTTAAGGCACTTGAGCGTGTGTTTGTAATAAAGGGTTTCTCTGAGCGCTGCTGTCAGTAAAAGGCCTCTCGGATCTTCGCCTGCAGGCTATCGCAGGTTTTCTTAGCGTCTCCCAGAAGCATGGCGGTGTTGGGTTTGTAGAAAATGGGGTTATCCACGGCGGCGTATCCCACACCGAGAGTCCGCTTCATCACAATCACCTGCACAAACATCAAGGTTATTGTAGTAAAACTACAATATTCCAATTCACAAGGTTCCAATTCACATGCTGTCCATACTAAACAGTACTTAAAAATCGAAATAGGGTGTAGTAAATTACAGCGTTAATAAGTGAACACCAAAGGTTACCGCATACGTTTCTACCTtagaggttttgtcttgtttctagtccaaatttcgaaacattcttaaatcaagaagcattttctagacaagcaaataaTATAGTCTTGTCTTCATAAATAatcagtcaaaatgaagtgagttttcctttacacaagcaaaataatctgtttaaagTAATCTcgtttaaaagcaaaaacaaaaagcttTATTAAATGAACTctccactttttttggaaatcAGCTTTAACAGCTCTCGAGTTAAACAGGTGAGTTTTACCATTGTtgagggactattttcaggtgctgcataatTTCATTGCTAAGCAATGCATTGACAAGCTTAAAAAGTAAagtacttttttaaaagaaataacgGCAGATCATAATGGATTACTTTGCTAACAAAGTAACAGTtactttttaaagacttttccCCAGATGGTATTAGATTAATTTTCCTAAAAAGTAATAGTTACATTACTTTTTTAACAGGAGTAACACCAAACTTTAATGCTTTAATTTgcttaaaaatataacaaaataagtaACATTACTTTTAACAGAAGTACCATTAAATTGTGATGGATTACTTTGCTATAAAagtaacaaagtaaaaaaaattttaaaccagTTACACCAGATTGTAAAGGATAACTTTGCTTAACAATGTAACagttacattatttttttcagaaacaccagattgtaatgcattactttccttAAAGTTACAAAGTAACAGTTACCTTTAAAGACTTAACCCTAGATGACAATAGATTACTTTTACTTAAAGTAACcgttacattacttttaaaagaagTAATGccagatttaaatttttatttgcttaaaaatatattaaagtaacaGTTACTTCTTAAAAGTAATGCCAGGTTGTAATGGATTACTTTGCTAACAAAGTAAGTTACTTTTTAAAGATTAAACCCAAGATGGTAAGTCATTACTTTTCTTAAAAAGTAACAGTTGCTTTACTTTTTAACAGAAGTAACACCAGATAGTGATGGATTACTCTGCTAACAAAGTAACAATTACTGTTTAAAGGGTCAACCGTGTATGGTAATAGATTACTTTTACTTAAAGTAATAGTTACATTACTTTTTAAAGATGTAATACCTTTATgtaataattaatacttttatttgcttaaaatataTCAAAGTAACAGTTACTTTACTTCTTAAAAGTAACGCCAGATTGTTATGGATTACTCTGTTAATAAAGTAAAGTAACAGTTACTTTTTAAAGACTTAACCCCAGATGGTAATTGATTACTTTTACTTAAAGTAATAGTTACATTAATTTTAAAAGAACTGATGCCAGATTTTAATGCTTCTATTTGcttaaaaatataacaaagtaacatttactttactttttaaacaaagtaaCACCACCTTGCGATGGATTACTCTGCTTAACAATGTaacagttacattttttaatgccAGATTGTAATGGATTTCTTTCCTTAGATTacttcactttaaaaaataacaaagtaatgtCAGATTGTAATGATTActtagtttaaaaaataacagttatttttttaatataatgccAGATTGTAACGTATTACTGTTATTAAGGTAACAGTTACTTTTTAAAAGGAGTAATGCTAGATTGAAATTTATTGCTTCACTTCAAAAGTAATAAAGTaacagttacttttttttaaaagtaccCCCATATTGTAATGCATAACTTCACTTAAAAAAGTAACAGTTACCTTACTCATTTAAAGTAGTAATGCGagattgtaatgcattacttgacTTAAATAACAAAGTAACAGTTACTTTTTAAAGAAGTAACCCCAGATTGTAatggattacttttaaaagtaactttccccagctCTGCCACAGAACAGTTCGCACCTGTTTGGACTTCCACACCTCCAGCACTGGCATCCCAGCGATAATAGAGTTTGGATCCTCCTGTGCGGCTGAGTTTACAGTGTCATTTGCTCCGATCACCAGTGTCAGGTCcgtctctgcacacacacacacacacacacacacacataaaacaataGCAGCGCTCTATTAGTGGCTCTCATGCGATGGTGTCGGCTTTCCTCTCTGCTCTTCAAGCTTATCTGCAGCAGCTAACCAAAAACACATGCTGTCCTCCGAGCGCAGACACACAGAAGAACAGGCTCGCATGTCTAGGCACAATTACATAATCACAATGAATTATTACAAAGATCAGAGCGCTGTAGGACAGCAGATGTGTCCTGACCGCAGTCGGACACTGATATACAGCGGATCATCCATCTGTATCTGAACACACTGATCCACAGCCACTGCAAACGCATTCATAATCGTTCTGTCTCAAACAAACACTGATTTTCATCTGTTAATCCTGAAAAATATGTATGTTGTCTACATTATCTAATACTGATAATACACAGCAAAAATACTTTTCTTTacaagagtttttgtcttgtttcaagtccaaatatctcaaaattcttaaaTGAAGATGCATTTTCTGGACTAGTTCAAAATATATCCTTGTttacagaaataatgagtcaaaatgaagagagtttttccttaaaacaagctaaatctgCCAATAATGAGGTAAACAAAATAATCCTGTTTttgaaataacattattttgcttgttatttTGGAAAAACTTACTCACTTTTAGCATATTTATAAAGATATTTGatgaaataaaagctgtttttgcaGTGCGTGGGAAAAAATATTCTGCTGTGGACTCAAATTTTTCTGTAATAACCAAAACAAACCATACAACATTTCTATCATAGTTCATTAAACAGAACACAATTAGTATGATCACTGTTTTGAAGGTGCTGTAAGTTTCTGACTCTATACTGCAGCTAtactgctgaagtcagatattctgctttgagtGTGCAGGAACGACTGTCTTTGGTctctttaacctgcccaatgccaatttagccaattatatttcagcaccccgggttgccagatggtggaaaacagcgcATTTCATTCAGCCCGTCATAAGGCTGTCTAAGCATGCGTCCATGACCAAactgtgacctctggtggacagtagcagactctgaaatgagccgcagattcagagttccacatgaggctattaatgagcaaataatatagtgcactcactgcactccagcacaatGCTGAGCTTTATCATCTAATGAACACATATTAAAGCTCttgaacatgattaaatgtagatgctgaatcactcatatgtgttggtttgcagttCTAGAGTTCAGTTTCAGACgctgagctgaactatctgctgctgctgtcagtagcatggcaataaatgtcatgtcagACTCACATTATGAGCAttgaacactgaataaagcacatgagctgtagcTGAGCTGagcattgtcagttttctgttgttcagctgaaATAGAAAACGTTTCTAATATGTCAATTTCAGCTGTTGGTTATGACAAAAACTCCTGTAATATGGAGAATAATCCTGTTGCGTGCTGCtgcttttatttacaacacaatttaaatcagtgTTTTGTCTCGATTGTCAGGCACGCttctgttggtgtcgtcaatctggcaacctgcacttgcatgtgttttgatccaggagtgcaatacctagctcAACCACTGGGTGGCAAACTTACagactgcacctttaatattcattcactcattttcttttcggcttagtccctttattattcaggggtcgccacagtggaatgaactgccaacttatccagcatttgctttacatagcggatgcccttccagctgcaacccatcactgggaaacatccatacacactcattcacgcacacacccatacactacggccagtttagcttatttaactgacctatagcgcatgtgtttggactgtggaggaaaacaccaacacggggagaacatgcaaactccacacagaaatgcgaactgacccagccaagggaaccagcgaccttcttgctgtggggcgacagcactacc

Function

symbol description
dtwd1 Predicted to enable tRNA-uridine aminocarboxypropyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA processing. Predicted to be active in nucleus. Orthologous to human DTWD1 (DTW domain containing 1).

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0016432 tRNA-uridine aminocarboxypropyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-23 Predicted to enable tRNA-uridine aminocarboxypropyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA processing. Predicted to be active in nucleus. Orthologous to human DTWD1 (DTW domain containing 1).

Ensembl:

ensembl_id ENSDARG00000111509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025137 True 5221 mRNA 0.39 4 5454341 5461423

Neighbor

gene id symbol gene type direction distance location
XLOC_012551 fgf7 coding upstream 520 5428472 ~ 5453821 (+)
XLOC_012550 dut coding upstream 135375 5308392 ~ 5318966 (+)
XLOC_012548 slc12a1 coding upstream 154313 5273953 ~ 5300028 (+)
XLOC_012549 CZQB01123183.1 coding upstream 176350 5277875 ~ 5277991 (+)
XLOC_012547 slc24a5 coding upstream 226921 5213338 ~ 5227420 (+)
XLOC_012553 mibp2 coding downstream 29245 5490668 ~ 5497405 (+)
XLOC_012554 NA coding downstream 41535 5502958 ~ 5505578 (+)
XLOC_012555 slc30a4 coding downstream 48828 5510251 ~ 5541784 (+)
XLOC_012556 CU595864.1 coding downstream 67558 5528981 ~ 5539574 (+)
XLOC_012557 nnt2 coding downstream 82254 5543677 ~ 5557060 (+)
XLOC_012544 NA non-coding upstream 333235 5111784 ~ 5121106 (+)
XLOC_012543 NA non-coding upstream 411888 5041943 ~ 5042453 (+)
XLOC_012542 CR792425.2 non-coding upstream 450957 5003269 ~ 5003384 (+)
XLOC_012541 AL954149.2 non-coding upstream 682283 4771136 ~ 4772058 (+)
XLOC_012558 NA non-coding downstream 139721 5601144 ~ 5601676 (+)
XLOC_012560 NA non-coding downstream 196904 5658327 ~ 5667616 (+)
XLOC_012561 NA non-coding downstream 211491 5672914 ~ 5677366 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000166_00211552_00215081 DTWD1 coding CI01000166 null 211552 ~ 215743 (-)