XLOC_012554


Basic Information

Item Value
gene id XLOC_012554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5502958 ~ 5505578 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026869
aataataatagtgagaacaaataacaacaataataatgatttaaacatagcaaaggaaagaaatatatacagtaaacacaccataaaacaattaaatacatgtaaataaatatattaaacattgtctctgtgtgtgtgtgtgtgtctctctctctctctctgtctctctctctctctctctctctctctctctgtctctctctgtctctctctctctctctctgtgtgtgtgtgtgtgtgtgactgtactGTTCTGTGTTTTCAGAGTCATTATCCAgcagcagtagcagcagcagatGTTTCTTTAGTGGAGCAGAACTCGCTG
>TCONS_00027031
gtatatttgtatgtgtgtgaagcaCTTTGAGATGCTTCttttaaaggtgctatataaataaaccacttTATCTGTGCTATTTTACAGCTGATTTACTGTTTGGGGTGTTTATTCTAAGACTGGAGCGTGAGTTAGAGAGCTGATGAAATATGAAATGTTTTTGTGCAATGATGATGTGTTGTTTCCTGCAGTTCAACCATGATCAACACGGCGGTCAGGTCtcctccgtctgtctgtctgtgtgtgtgtgtgtgtgtgactgtactGTTCTGTGTTTTCAGAGTCATTATCCAgcagcagtagcagcagcagatGTTTCTTTAGTGGAGCAGAACTCGCTGGTCTATATTTGGGTTTGGTGTCTAATACACAAACCTCCACCCAGACCAGACCAGACCCGTTCCCCCACCACACCACGCCAGCTCTTATATAAGAGAAGCCCCAGCCTGACCTGctgaccgcacacacacacacacagagagacagacagctgTTTATCCAGTCTCACCTCCACATGTGCTCAGCGTCTGAGGTTTTGTTTTTCTCCTTCAGGCCCAAACATCTAAATACAGACGCAAATTGAAACGCCCGCGCGGAAAGGAGGAGCACGACACCCGCAAAACCACCCGGAAACCAGGCCTGcatCGTGCATGATGTGCTCCACAGATGACTCCAGCAGCAGCAGCGCCACACCTCTGGAACATCTGGATCAAGGATCAATTCCATGATGCTCTGCTGCCCCCTGCAGGTCATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026869 False 325 lncRNA 0.37 2 5502958 5504254
TCONS_00027031 True 755 lncRNA 0.48 2 5503914 5505578

Neighbor

gene id symbol gene type direction distance location
XLOC_012553 mibp2 coding upstream 5553 5490668 ~ 5497405 (+)
XLOC_012552 dtwd1 coding upstream 41535 5454341 ~ 5461423 (+)
XLOC_012551 fgf7 coding upstream 49137 5428472 ~ 5453821 (+)
XLOC_012550 dut coding upstream 183992 5308392 ~ 5318966 (+)
XLOC_012548 slc12a1 coding upstream 202930 5273953 ~ 5300028 (+)
XLOC_012555 slc30a4 coding downstream 4673 5510251 ~ 5541784 (+)
XLOC_012556 CU595864.1 coding downstream 23403 5528981 ~ 5539574 (+)
XLOC_012557 nnt2 coding downstream 38099 5543677 ~ 5557060 (+)
XLOC_012558 NA coding downstream 95566 5601144 ~ 5601676 (+)
XLOC_012559 ulk3 coding downstream 112790 5618368 ~ 5641730 (+)
XLOC_012549 CZQB01123183.1 non-coding upstream 224967 5277875 ~ 5277991 (+)
XLOC_012544 NA non-coding upstream 381852 5111784 ~ 5121106 (+)
XLOC_012543 NA non-coding upstream 460505 5041943 ~ 5042453 (+)
XLOC_012542 CR792425.2 non-coding upstream 499574 5003269 ~ 5003384 (+)
XLOC_012541 AL954149.2 non-coding upstream 730900 4771136 ~ 4772058 (+)
XLOC_012560 NA non-coding downstream 152749 5658327 ~ 5667616 (+)
XLOC_012561 NA non-coding downstream 167336 5672914 ~ 5677366 (+)
XLOC_012563 NA non-coding downstream 331520 5837098 ~ 5839834 (+)

Expression


Co-expression Network