CI01000304_12819247_12825161


Basic Information

Item Value
gene id CI01000304_12819247_12825161
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12817979 ~ 12825313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12819247_12825161.mRNA
ATTTAAAAGTACCGGATCAAAATCTGAATTGTTTAACAAGTTGCTTATTTATAAAGGCGATTACATACAATTCAGGACGCTGCTGAAAAAAACAACAGTGCAGTAACTGTTGAACAAAATCATTAACTACAGGCCAGACCAATGAGCCCCTCAGCTGGAAGAGACACACCCACCCACGCACACGGACAGAGGTGATAAGACAGTCTCACATAGCGCCAGTGGCGAACTCTCACTTTGATAACACTCCTGTTCCAGGGGATGCTTGTCGAAACACACAGACATACACAGACAGTGGTGGTGAACAGAGGCCTCTGCTAGCCACAGGCACCTCCAGCAATTAACTGACAATCCCCTGACAAGCTGACATAAACCCCATGAAGCCTGGGTTATTGTGGCTGTATGTGTGTTCACTAAAAAAGGATTCCTCAATGCAATATTTTAAATAAAAAACGATTAAAGATTATAAAATATTAAAAAAAATATATATATTTTTTAAAAATAACATAACATTAATTATACTGTGGAAAGGCCATAATATTGGATTTATGTCAAGCTTTTAAATTTGAAAATAAATCTCAATTTAAATATGTACAAACAAACAATTTGCGCTGCCAATAAACACAGCACAGATGTGCTGGATGGAGCAAAACTCTAATATTTGTATTTTCCAAGTGCCGAACAGCTTTAGTTCTAGTGCCATTATCATTAGTTATGGATTAATTTTCCCAGACATGCTTGATCCAATTGTTCTCATACAATCAACATAAACACTTCAACACGCAAACAAGCCTAGATGAATAAACACCAACAGAAAAGTCTCGCTCATAACTTGGCGGCCCTGCCGAGCTGCCAAAGATCTGCTTTGTAAACAACAAAAATATTTAATTTGAGAGAGTGATGCTGAGCAAAATGAAATTAAAAGGAACTCATGCTAACTGTTAAATTACTCACAGCGTGCTAAATTACATTTGCTTTTCCATCGGAGAGATCAAACGGGAAAACTCTAGCACTCCAGTGCTAATTATTTACAGTCTTCACCTCCCTCCCATCCCAGGAGGCCTAATAAACACACTATTTCTCTCTCTCACACACGTTTTTGCGCACACTTGTTTATATCTGTTTTTTTTGTTTTTTTTTAAATAATTATATTCCCCCACCTCTTTTCCCGCAACCCCATAAACTCTGGCGGCAAGAGCCGAGATTGAGATTCGGATTGTAATCCTAGTGTGCACTGGGGCTTCTTAAAAAAGCAGACCATCTAAAGCAGGATGGGCCCTGTGGGAGTGTTGCTGTGGCAGCGTCGCCATGGGAGCAAGGGAAATTGGCCATCGGCATTATCTCAAGCTAACGCCGCACGCTCGCACTGGAACATGATCCAAAAGCTACAAAAGCAAACTTTCGCCGCATGCAACACCTGTTTGCGATTAGTGTGTTCGACAATGCTCACCTCCCTTTGGACTACTTTGTTTGGCTTCAAAGTTCTAACTAAAGATGTAAACATCACGCTAATAATCCCAAAGTCCAGGATAACAGTAACAGGACCAGGGCAGGGTCACTCCCACCTGCTGAGGATCAGAGTCTCAAGCAAGTCAGAGACTCATTCTTCTGCCCGTCTTAAATCCCTCCATTCTCAGGAGAGCATGGTGAACGCTGGCGGTGGCCCACGCTCCAGCCTGACAGCCATCTGCCGAGTCCCATCGGTCCACTGGCGAGTGATACAGAGCAGGCAGGCGATCTCTCCCAAGAGTGTCTACATGGCGTGTGTAAAGGGGTTGTTCTGTGGCTTTGCTGAGAGCCCCTTGAGTCACCGTTTCGGGCTGGAGGCCCAGGGGAGGAGGGTGGTTGTTTGTGAGGCAGAGGGAGAGAGTGAGCCCACTCCAAAGCTGCCTCCTCAGGCTGTGGCCCTCTGGAGGGTCGCTGGAACGTCTTGGAGCCATCTGGGGAGAAGTGGAGCGTGGCAGAGAGCAGCTGGACCCTCTGAGCGCCTATTTAAGTACTGGCAGCCCTGAGGCACCATCAGTCACATCACAGAGACAGAGCAGGGACATGCAGAGAGGGGCAAGTAGGAAACAGACACCCTTAAAATATAATTGCCCACAAATCACCAGCCCATGCCCCCAATATGCCCTTTGCTCACTCTATAAAAACAGATTTTACACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12819247_12825161.mRNA True 2161 mRNA 0.45 4 12817979 12825313

Neighbor

gene id symbol gene type direction distance location
CI01000304_12744525_12773999 NA coding upstream 43667 12744059 ~ 12774312 (+)
CI01000304_12718988_12729338 NA coding upstream 88129 12718767 ~ 12729850 (+)
CI01000304_12653236_12670625 CXADR coding upstream 146996 12652837 ~ 12670983 (+)
CI01000304_12601154_12621980 EHD1B, EHD1 coding upstream 195986 12600836 ~ 12621993 (+)
CI01000304_12583384_12588591 WDR74 coding upstream 228915 12583384 ~ 12589788 (+)
CI01000304_12828251_12839287 NA coding downstream 2001 12827314 ~ 12839991 (+)
CI01000304_13331382_13338351 RNFT1 coding downstream 506069 13331382 ~ 13339248 (+)
CI01000304_13435609_13438459 PTRH2 coding downstream 610194 13435507 ~ 13438730 (+)
CI01000304_13578347_13595075 NA coding downstream 752736 13578049 ~ 13595097 (+)
CI01000304_13613026_13686604 CBLB coding downstream 787713 13613026 ~ 13686604 (+)
G425834 NA non-coding upstream 123089 12694618 ~ 12694890 (+)
G425835 NA non-coding upstream 123561 12693084 ~ 12694418 (+)
G425832 NA non-coding upstream 126917 12690429 ~ 12691062 (+)
G425831 NA non-coding upstream 128214 12689434 ~ 12689765 (+)
G425817 NA non-coding upstream 128903 12688849 ~ 12689076 (+)
G425930 NA non-coding downstream 64018 12889331 ~ 13036691 (+)
G426266 NA non-coding downstream 254359 13079672 ~ 13079904 (+)
G426274 NA non-coding downstream 293596 13118909 ~ 13119304 (+)
G426278 NA non-coding downstream 298144 13123457 ~ 13123685 (+)
G426288 NA non-coding downstream 308835 13134148 ~ 13134657 (+)
G425718 NA other upstream 378893 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 2262275 10555216 ~ 10572164 (+)
G424251 NA other upstream 2625084 10188822 ~ 10189404 (+)
G424246 NA other upstream 2690657 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 3252406 9561005 ~ 9565778 (+)
G426312 NA other downstream 1504735 14330048 ~ 14330886 (+)
G426828 NA other downstream 2123577 14948890 ~ 14950592 (+)
G427860 NA other downstream 3060141 15885454 ~ 15889591 (+)
G428017 NA other downstream 3257917 16083230 ~ 16083714 (+)

Expression


Co-expression Network