CI01000304_15047768_15063987 (ROBO4)


Basic Information

Item Value
gene id CI01000304_15047768_15063987
gene name ROBO4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15047768 ~ 15064170 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15047768_15063987.mRNA
ATGACGGTACACTTTATCGAGCTCTGTTGGGTTTTTGGGATTATTTATAATATTGAAGAGTGGGAAAAACAGCCTCCAGCACAGGAAATGTCTTTCCCTTACTCATCGCGGGGTCATCTGGCCATCCTAAACAAAAGAATTCAACAAGGTTCCAGGCTTGTTTCAGATAGTGGCTTACCCCGTATCGTCCACCATCCCTCTGATGTGGTGGTCCGGGTGGGCAGCCCGGCCACGCTATCCTGCAGGGCAGAGGGCAACCCTGAGCCCACCATTCAATGGCTCAGAAATGGCCAACCACTTGATACAGACAAGATGGATGCGCAGTCACAGCCTATCGTTTTACCAGAAGGAAGCTTGTTCTTCTTCAGTGTCGTCCCCGGCCGAAAGAGTCAGTCCCATGAAGCAGTTTATGCCTGCGTTGCTCGGAACAGCGCCGGGATTGCGACCAGCAGAAACGCCTCTCTTTATATAGCAGCTCTGCGAGAGGACTTCCGTGTGCAGCCCAGTGACGTGGAGGTGGTGGTTGGCGAGGTGGCTGTGATGAACTGCAGCCCACCCGTCGGACATCCTGAGCCCAACGTCACCTGGAGGAAAGACGGGATCCTCATCAACAGCAGCAATGAGCATTATAGTGAACTGAATGGTAAACTGATAATTGCTCCAGCCCAGAAGAATGACTCTGGAGTTTACAGCTGTATAGCCTCAAACATAGTTGGAGTGCGGGAAAGCCGGGCCGCTCGGCTGTCTGTATTAGCTAAGCCAATGTTATTGCGTAAACCAGAGGATGTCTCAGTGCAGCTTGGGGAGTCAGCACAGTTTTTCTGTAAGGCTGATGGAGACCCCATGCCTTCCGTAGAGTGGAGCCGAGACCAAGGACGTCTACCCAATGGCAGATATTTAATCAACCCAGACCACAGTCTGCAAATCCACTACGTGACGGCTCAGGACATGGGCAGGTACACCTGCACTGCAGAGAATAAGCTCGGGGTGTCTGTGGCCAGTGCACAGCTTCTTGTAGAGGCATGCCATTTGTATTCCACTCACCCTGTTGAGATTAGTGATGGCTGGCTAATATATGTTACAGATACAGGAAGCATTAGACTGAGAGACCTGCACAAGGAGCTGTCTGCCTTACGTGTGAGCCTGGAGAACGTCACAGTTATGAGTACAGCCTCCAATATGTCTCAAGTCATGTGGAGGTTGCAGTCATCTATGTCACAGCCTCATTATCTTGAAGGCTTTGAGGTGCTGTATCGCTCTCTCCTGCCTGCCAGCTCAGAGTGGACAGCTCAAAGTGTTCCTCAGCCTGGTCTTCACACCCATGTGGGACCTCTGAAGAGAGGCTACAAGTACGAGTTCAAAGTCCGACCCTACGGCAGCAGCCTGTACGGCAGGGAGAGCAACACAAGACACTTACGAGTGCCAGAGATAGTTCCCAGCGCACCACCTCAGGATGTGTCCATAACAATGCCCACTGACCGCAATGACACCGTGCACCTCAGCTGGGATCCTCCACCTCATGACGCTCACAATGGGATCATTCAGGGATATCAGGTGTGGTGTGTGGAGTCTGAGGAACTGAAGTCTTTTAACTGGACGGTGGACAGTGGAACACACAGTATTGAGATCAGCACGCTGCAGCCTGGCAGGCTTTACTGGGTCACAGTGGCTGCCGTTAACGGGGCGGGAGTGGGGGTCCAGAGCGACCCATACAAACTGCTTATAGAGTCGAGGCAGGAGTCAGCACCACTTCAGACAGGCATACTGAGTATGTCTCATTTCCTTGCTGTGATTAAAGAGCCTGTATTCATTGGAAGCGCTGGCACCCTCCTGTGGTGTATTTTGATGATTACTGCCCTGTTTTTATACAGGAGACATGTCAGACACGTAAACCCGGGAGGCAAAAGCTCAGGTTTATATAGACTGGAAAGTGAAGATCTCATCATCAAACATAGAATGGCGGCCCCAGACTCTCCGTGGATCTCTGGAGACTGGAGGCCAGACTCCAGCAGTGAGCCCAAGCAGGGCCTGTGGACCCCAAGGCAGGAGAACTCTGGCTTCCGGAGGACCACTCTGCCCATTACGGCTAAAAAGGACCCCAACCCCCTGCGGTCAGCCGTCCCCATCGTACCAGACAATTGCGGCGTCTATGGCACCTTTTATGTGGATCTAACCGGCAACGGACTGAAGACGTTTAATAGTCCGGGTCGCTGTCCCAGAATGCCCCACAGCAACTCTCAACTGCATAACTCAGAGACTGTTCGCATCACCGAACCCATCGTCAAAACCGCCGTTGTGAGGGAAGTGCAGGCATTGCCATGGAAACGTGCCCTCCCTTCCCAGCCCAACATGGGACTTCTGAAGGAATCGTGGGAGAAAAATTACAAGCGTGAGCTGCACGCGGTGAAAAGTGCCCCGTTAATGCCTGTGAATCAACAAGTTCTGGCAGTGTGCAATGTACCAAATAACCATCAGCAAAGATTCAGTCAGCACCCTGCAGGTGGTGTATCAGATCCTGTGAAGTCACCAAGTTCTCCACGTTTCCTGCATTACTCCGCCTCTCTGCAGCTGGTGGACATGTTACCCAGCCCTCCGCCTCTTCCTGTGGAGGACAACCACAGCCTCAGCTCAGAGGACGAGTCTACCAGATCCACCAAGCTGACAGTCGACATTGGCTCTCAGCAGTCTGTGTGTGCTGCCTCTGGGCTCCAGGGTCTCGCTACGGCCACTCCTGGCTGTCCAACCCACCACAGCCCAGCCCAGCTAAGCCCATCCTATAGCCACCTGTCCACTGCCTCCTTCTGTCTCTCCAATGACGACTACGAGGACACCACGCTCAGTACTCAGGGCCACACTCAATACATGGAGATCAGCCCTAAACCACAGAGACAAAGTACGTCTCATCAGAGTTCTCCATCAATGCCCCGTCCATTTTCTCCCACGCCTACGTTCGGTTACATCTGCGGGCCTGCCGACCAGGAGATGGATGACGAGCAGGAGTCTCAGCCGATCGGCCTCAGGAGAGCCACCCTGAGAAGCACGCCCTCCTCTTGTTGCAGTGAATGGGAGGGTTCGTTGTGGAACGGCTGGGGTTCAGTGTCCGAGAGCAACATGGCAAGCGCTCGAACGAGTATCATCAGCTCTTCTGACTGCTCGTTCATAAACGATGCGAACTTTGCCCGCGTCCTGGCTTTGACAGCCGAATCTATGAGCGATTTCTCCCCGCCTGCATCTCCCCTGAGTGTTCTGTTCCCCCCTCGAGAGTGTTTTGGAGAGGTGGAGCCGCTGCCCGTGTGGGACTGGAGCACAGCGTGGGTGGAGGAGCTGGAGGCCCAGTTCAAAGCCTCCAGAGACACCAGAAGACCCGCCACATCTAGCCGACTCTCAGGCATTGAGCGCTGGAGAGGACATTTGGAGACCCCCTCGCACCGATGATCGACTCGCACACGCTTAAGGGTTGTTTATGGACTACATTTCCCTGCGTTCCTCAGGGCAACCCCTCTCCTTGTAGTTTTGATGGTCTTGGGTTTGTAGCAAGGTCAATTAAATCGAAGAACACAGTGCTGTAAGGTACAGTATGTGCAGTGTACGCCACTTGTACAGTTGTACCACACCATA

Function

symbol description
robo4 Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within several processes, including plasma membrane bounded cell projection assembly; positive regulation of Rac protein signal transduction; and positive regulation of cell-matrix adhesion. Is intrinsic component of plasma membrane. Is expressed in several structures, including cardiovascular system; central nervous system; neural tube; optic cup; and vestibuloauditory system. Human ortholog(s) of this gene implicated in aortic valve disease 3. Orthologous to human ROBO4 (roundabout guidance receptor 4).

GO:

id name namespace
GO:0051057 positive regulation of small GTPase mediated signal transduction biological_process

KEGG:

id description
K06784 ROBO4; roundabout, axon guidance receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15047768_15063987.mRNA True 3618 mRNA 0.53 20 15047768 15064170

Neighbor

gene id symbol gene type direction distance location
CI01000304_15040739_15045239 NA coding upstream 2511 15040552 ~ 15045257 (+)
CI01000304_15034188_15038152 TMEM218 coding upstream 9270 15032081 ~ 15038498 (+)
CI01000304_14695603_14740389 NTM coding upstream 306689 14695603 ~ 14741079 (+)
CI01000304_14356867_14373980 NA coding upstream 673102 14356586 ~ 14374666 (+)
CI01000304_14352375_14355516 HSP70, HSP7C, HSPA8, HSPA1L.S coding upstream 692252 14352375 ~ 14355516 (+)
CI01000304_15140709_15147357 NA coding downstream 76391 15140561 ~ 15147557 (+)
CI01000304_15148523_15151340 NA coding downstream 83664 15147834 ~ 15151395 (+)
CI01000304_15231039_15234179 NA coding downstream 166869 15231039 ~ 15234583 (+)
CI01000304_15265823_15269133 MSANTD2 coding downstream 200798 15264968 ~ 15269591 (+)
CI01000304_15315146_15318470 ESAMA coding downstream 250976 15315146 ~ 15319987 (+)
G426853 NA non-coding upstream 103908 14943644 ~ 14943860 (+)
G426851 NA non-coding upstream 105554 14941924 ~ 14942214 (+)
G426834 NA non-coding upstream 115841 14931691 ~ 14931927 (+)
G426833 NA non-coding upstream 116975 14930508 ~ 14930793 (+)
G426920 NA non-coding downstream 85672 15149842 ~ 15150398 (+)
G426923 NA non-coding downstream 111109 15175279 ~ 15175635 (+)
G426928 NA non-coding downstream 130139 15194309 ~ 15194689 (+)
G426929 NA non-coding downstream 135694 15199864 ~ 15200129 (+)
G426930 NA non-coding downstream 138479 15202649 ~ 15202986 (+)
G426828 NA other upstream 97176 14948890 ~ 14950592 (+)
G426312 NA other upstream 716882 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 1468921 13578049 ~ 13595097 (+)
G425718 NA other upstream 2608682 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 4492064 10555216 ~ 10572164 (+)
G427860 NA other downstream 821284 15885454 ~ 15889591 (+)
G428017 NA other downstream 1019060 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 1440692 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1691776 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1946560 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location